Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc272154g00006 ATGCCATCAATGATGTTGTTTCCCGGTCTGAATAGGGAGAAGGAGATGTCTGCTATGGTTGAAGCTTTGACTCATGTTGTTTGTGGAGAAATACCTCAAGAAGATCTTGCTGTGACACCTAACATGGCTTCTGTGTCTGAAACACCATCTACGTCGTCTTCATCTTATGGGGCCAATTCTAATCTCAAAAGAAGTAGACAAGATGATATACCCTTTCTTGCTTCATCCTCTGCTTCTATTCCACCAATTGCAGAGGTTGGAATGAAGGGGAAAAGAAGAGAAATGGGAGATGATGCAGTAGTATACGAATACAGAACGGATCTAAAGAAAAGTGATGAGAAGAAGGAGAATAATAATAATGAAGAAGTGAAGAAGAAATACAGAGGAGTGAGGCAGAGGCCATGGGGAAAGTGGGCTGCAGAGATAAGAGATCCATTCAAAGCAACCAGAGTGTGGTTAGGAACCTTCAATACTGCTGAGGCTGCTGCCATTGCTTACGACCAAGCTGCTCTCCGCTTCAGAGGAAACAAAGCCAAACTCAACTTCCCTGAGAATGTTAGGGTGAAGCAACCACCACCATCACCACCACCACCACCACCACCAACTTCTCCTTTCACCATTTCCCATACTACTTCTACTTCTTCTTTTTCTGGTGCATATGTGCCCCTTCCACCAGCCACCGAGGCTTATTTATATAGTACTGTGGAGGCTTCACCATCCAACTTTCATAGCTTCTCCTCAGAGTTTTCAGAGTTTCCCATCAGTTTATATGATCAGATGATTGCGTCGTCTGCAATGGCTTCTCATATTCAAGCTTCTTCGCCAGCGGCGTCGAGTTCTTCTGCTTCTTCAGTGTTTGCTTGCTGTGCAACATCTCCTCCACAGGCACCTCGAGTTCCTTCTGTTTATTCTACTAAGGTGCCGCCACGGTCTTCTTCTGCTTATACCTCTTCGCCTTCTGGATGA 966 0.4513 MPSMMLFPGLNREKEMSAMVEALTHVVCGEIPQEDLAVTPNMASVSETPSTSSSSYGANSNLKRSRQDDIPFLASSSASIPPIAEVGMKGKRREMGDDAVVYEYRTDLKKSDEKKENNNNEEVKKKYRGVRQRPWGKWAAEIRDPFKATRVWLGTFNTAEAAAIAYDQAALRFRGNKAKLNFPENVRVKQPPPSPPPPPPPTSPFTISHTTSTSSFSGAYVPLPPATEAYLYSTVEASPSNFHSFSSEFSEFPISLYDQMIASSAMASHIQASSPAASSSSASSVFACCATSPPQAPRVPSVYSTKVPPRSSSAYTSSPSG 321
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc272154g00006 321 Coils Coil 113 133 - -
Stsc272154g00006 321 PANTHER DNA-BINDING DOMAIN 65 264 IPR044808 GO:0003700|GO:0009873
Stsc272154g00006 321 SMART rav1_2 126 189 IPR001471 GO:0003700|GO:0006355
Stsc272154g00006 321 PRINTS Ethylene responsive element binding protein signature 149 165 IPR001471 GO:0003700|GO:0006355
Stsc272154g00006 321 PRINTS Ethylene responsive element binding protein signature 127 138 IPR001471 GO:0003700|GO:0006355
Stsc272154g00006 321 MobiDBLite consensus disorder prediction 42 63 - -
Stsc272154g00006 321 MobiDBLite consensus disorder prediction 288 321 - -
Stsc272154g00006 321 MobiDBLite consensus disorder prediction 185 211 - -
Stsc272154g00006 321 ProSiteProfiles AP2/ERF domain profile. 126 183 IPR001471 GO:0003700|GO:0006355
Stsc272154g00006 321 Gene3D AP2/ERF domain 125 185 IPR036955 GO:0003700|GO:0006355
Stsc272154g00006 321 SUPERFAMILY DNA-binding domain 126 184 IPR016177 GO:0003677
Stsc272154g00006 321 Pfam AP2 domain 126 175 IPR001471 GO:0003700|GO:0006355
Stsc272154g00006 321 MobiDBLite consensus disorder prediction 305 321 - -
Stsc272154g00006 321 MobiDBLite consensus disorder prediction 188 205 - -
Stsc272154g00006 321 CDD AP2 127 185 IPR001471 GO:0003700|GO:0006355
Stsc272154g00006 321 FunFam Ethylene-responsive transcription factor 2 125 184 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc272154g00006 Stsc-Chr272154 36499 38555 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc272154g00006 124 203 AP2-EREBP Transcription Factor Family AT2G33710 70.000 3.78e-34 123
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2 or ERF-ERF Stsc272154g00006 AP2 5.2e-14 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc272154g00006 - - adu:107480341 324.324