Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc272154g00002 ATGGCTTCATGTGAGGATAGTGGTAACAACATGAATGAAGGAGCTTCGGATACTATTTCTAATCCTAGTCATGGCACATCATCCATGAATGATAGCAATGGCAAATGCAACTGCATGAAAAGTCAATGCGTGAAGCTCTATTGTCAATGCTTTAGTGCTGGGAACTTTTGCAACGATAATTGTTCATGCAAAAATTGCTTAAATAATGAAGTGAATAAGGATAGTGTGAACCAGATAAAGAAGGAAATACAATCGCGTGATCCGCGCGCGTTCGAACCCAAGGTTATTGTTGACCAAGGGGCAAGGAACAGAAAAGGTTGCATTTGCAGAAAGTCGGAGTGCAAGAAAAACTATTGTAGTTGCTTCGCTTTTAAAGTCGGTTGCTCTCGTCATTGCCAATGTCAAAATTGTATGAATGAGTATGGAGTCAAAGGCTCCTCTTCTGGCGCAAAGGAACAAGAACGTGTTAATGATTCTAATAATGGCAGCAAGAACGTGGAAACCATGGATAATGGATCATCTTCTCAATCTCACCACCCACCTCCACCTGTCTATGACAATTCCCCAAATCAGCTTTCTGAAAATTCAAATGCTAGAGCGGATGATGAATTGGGCAACAGCAATGTGAATAATATCCCTATGCCAATGCCATCAAATCAAGTTGCTTCTCCTTATCATAATTTTGCTGTTCAACAGAACCATGTTGCTGCACCTTATTATTATCGGCCTCTAACGCCAGTGCACATTCAGAGCAGCAGAAACAACATTACTGAGCAGCAGAGTACTAACTTGTTTGGGGATCCCGATTGGCAGGGACAATCAACTTTTCTGAGGACTAATCCTCCCTTCTATTATGATAATAATGTTGCTGAGCTCTCATCAATTCCAAGGATTCAGAGTAGTCATCAGTATCTACCTCATCAGAGTCATGGTTTTCATCAACAGGTAGAAGAAGCACCATTAGGTGCAATGACTCTCCAACTTCCATTCCTGAGGAGTTCACAACAGCCAAATAATGGTGATGGAACAAACATGCAATTGAATCTTCATCCTCACCTTCATGGCCATGGGCCATCTCCTCCTCCTACTGCTGATTATGAAGAGAACCACCACCATGGGATGTTTCTGTTGCAGAATAATAGGCCTCAATAA 1152 0.4175 MASCEDSGNNMNEGASDTISNPSHGTSSMNDSNGKCNCMKSQCVKLYCQCFSAGNFCNDNCSCKNCLNNEVNKDSVNQIKKEIQSRDPRAFEPKVIVDQGARNRKGCICRKSECKKNYCSCFAFKVGCSRHCQCQNCMNEYGVKGSSSGAKEQERVNDSNNGSKNVETMDNGSSSQSHHPPPPVYDNSPNQLSENSNARADDELGNSNVNNIPMPMPSNQVASPYHNFAVQQNHVAAPYYYRPLTPVHIQSSRNNITEQQSTNLFGDPDWQGQSTFLRTNPPFYYDNNVAELSSIPRIQSSHQYLPHQSHGFHQQVEEAPLGAMTLQLPFLRSSQQPNNGDGTNMQLNLHPHLHGHGPSPPPTADYEENHHHGMFLLQNNRPQ 383
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc272154g00002 383 MobiDBLite consensus disorder prediction 1 26 - -
Stsc272154g00002 383 MobiDBLite consensus disorder prediction 143 218 - -
Stsc272154g00002 383 PANTHER PROTEIN TESMIN/TSO1-LIKE CXC 2 31 250 IPR044522 GO:0003700
Stsc272154g00002 383 MobiDBLite consensus disorder prediction 188 218 - -
Stsc272154g00002 383 MobiDBLite consensus disorder prediction 334 368 - -
Stsc272154g00002 383 MobiDBLite consensus disorder prediction 150 181 - -
Stsc272154g00002 383 Pfam Tesmin/TSO1-like CXC domain, cysteine-rich domain 105 140 IPR005172 -
Stsc272154g00002 383 Pfam Tesmin/TSO1-like CXC domain, cysteine-rich domain 35 70 IPR005172 -
Stsc272154g00002 383 ProSiteProfiles CRC domain profile. 32 142 IPR005172 -
Stsc272154g00002 383 SMART CXC_2 31 72 IPR033467 -
Stsc272154g00002 383 SMART CXC_2 102 143 IPR033467 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc272154g00002 Stsc-Chr272154 9120 10337 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc272154g00002 35 167 CPP Transcription Factor Family AT3G22760 41.892 1.13e-33 129
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF CPP Stsc272154g00002 TCR 6.5e-09 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc272154g00002 - K21776 ahf:112771246 200.29