Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc272154g00001 ATGGCGAGTAGCAGTGGCAACATGAACGAAGAAGGAGCCTCGGATAATAATCCTGGAGATCTCGATCTCAACAAGGAAAAGAATCCATCATCATCCATCAATGACGATGCCAATCGCGGATGCAGCTGCAAAAAGAGTCGATGCGTCAAGTTCTACTGCAAATGCTTTAATGCTGGAAATCTTTGCAACGATTCTTGTTCGTGCGAAAATTGCTTGAATAATGAAGCGAATAAGGATGCTGTGGAAGAGATAAAGAAGAAAATACTGTGGCATGATCCAGACGCGTTTGAATCCAAGAATGTGGCAAGAACCCGTAACGGTTGCCATTGCAGAAAGACAGATTGCTCGCTTCAATATTGTGTTTGCAACCGTAATGGAGTTGGTTGCACTCTTAACTGTCGATGTCAGGGTTGCAAGAATAAATATGGAATCAAAGGCTCCTCTTCTTCCGCAAAGGAACAAGAACTTCCTAATGGCAGCAAGAACGTGGAAACCATAATGGATAATGGATCATCATCATCTGATTCATCTCAATCTCATCATCCAGCTGTCCACGCCAATTCCTCAATTCAGCTTCCAGTTCCTGATAATTCAGATGCCAGAGCGGATGATGATGAATTAGGCAACAGCAACAATGTGGATAATATCCATATGCCAGTGCCAACAAATCTAGTTGCTTCTCCTTATTATAATTTTCTTGTTCATCAAAACCATGTTCCTGAAACCCCAGTGCAGATTCAGAGCAGCAGAAAAAACATTACTGAGCAGCAGAGAACTAATCCCAATTGGCAGGGACAATCATCTTTTCTGAGGTCTCCTCTCTATTATGATAATAATAATGTTGCTGAGCTCTCATCAGATCCAAGGATTCAGCAGTATCAACCTCATCAGAGTCATGGTTTTCGTCAACAGGTAGAATCATCATTACGTGCAATGACTCTCCAACATCCATTCCTGAGGAGTTCACAACAGCCAAATAATGGTGATGCAACAAACATGCAATTGAATCTTCATCCTCACCTTCATGGCCATGGGCCATCTCCTCCTCCTACTGCGGATTATGAAGAGAACCACCACCATAGGATGTTTCTGTGGCAGAATAATAGGCCTCAATAA 1116 0.4247 MASSSGNMNEEGASDNNPGDLDLNKEKNPSSSINDDANRGCSCKKSRCVKFYCKCFNAGNLCNDSCSCENCLNNEANKDAVEEIKKKILWHDPDAFESKNVARTRNGCHCRKTDCSLQYCVCNRNGVGCTLNCRCQGCKNKYGIKGSSSSAKEQELPNGSKNVETIMDNGSSSSDSSQSHHPAVHANSSIQLPVPDNSDARADDDELGNSNNVDNIHMPVPTNLVASPYYNFLVHQNHVPETPVQIQSSRKNITEQQRTNPNWQGQSSFLRSPLYYDNNNVAELSSDPRIQQYQPHQSHGFRQQVESSLRAMTLQHPFLRSSQQPNNGDATNMQLNLHPHLHGHGPSPPPTADYEENHHHRMFLWQNNRPQ 371
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc272154g00001 371 MobiDBLite consensus disorder prediction 23 39 - -
Stsc272154g00001 371 MobiDBLite consensus disorder prediction 146 215 - -
Stsc272154g00001 371 SMART CXC_2 103 144 IPR033467 -
Stsc272154g00001 371 SMART CXC_2 36 77 IPR033467 -
Stsc272154g00001 371 MobiDBLite consensus disorder prediction 146 195 - -
Stsc272154g00001 371 PANTHER PROTEIN TESMIN/TSO1-LIKE CXC 2 25 99 IPR044522 GO:0003700
Stsc272154g00001 371 Pfam Tesmin/TSO1-like CXC domain, cysteine-rich domain 106 141 IPR005172 -
Stsc272154g00001 371 Pfam Tesmin/TSO1-like CXC domain, cysteine-rich domain 39 75 IPR005172 -
Stsc272154g00001 371 ProSiteProfiles CRC domain profile. 37 143 IPR005172 -
Stsc272154g00001 371 MobiDBLite consensus disorder prediction 1 40 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc272154g00001 Stsc-Chr272154 7005 8239 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc272154g00001 12 155 CPP Transcription Factor Family AT3G22760 36.810 4.71e-30 118
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF CPP Stsc272154g00001 TCR 3.7e-07 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc272154g00001 - K21776 ahf:112771246 144.821