Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc272152g00002 ATGGGGCGATGTCATGGCAATTTTACAGAACTATCGCTAATCAACGGTTTAGGCGAGGCGTTGAAGCAGAGAAAGAAAACCACAGGGCGTAAGAAAATTGAGTTCAAGAAGCTTGTCAATGAAGCAAACAAGCAAGTAACCTTCTCAAAGAGGTGTGCCGGAATGTTCAAGAAAGCCAGTGAGCTATGCATATTATGCAACGCTCGCGTTGCCATTGTAGTGTTCTCGCCGGTCGACAAGTTGTTCTGCTTCGGAGAATCCAGCACGGAGGCTGTGGTCAACCGGTACCTCAAAGGAGCACCAGAGTTTAAGCCAATAAAGCCCTCGAAAGGTAAGAAGCCGGTGTCATGTGAAGAGCATAATAGAATAATATCTCTAACATAG 384 0.4583 MGRCHGNFTELSLINGLGEALKQRKKTTGRKKIEFKKLVNEANKQVTFSKRCAGMFKKASELCILCNARVAIVVFSPVDKLFCFGESSTEAVVNRYLKGAPEFKPIKPSKGKKPVSCEEHNRIISLT 127
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc272152g00002 127 Gene3D - 40 104 IPR036879 GO:0003677|GO:0046983
Stsc272152g00002 127 SUPERFAMILY SRF-like 29 98 IPR036879 GO:0003677|GO:0046983
Stsc272152g00002 127 ProSiteProfiles MADS-box domain profile. 28 88 IPR002100 GO:0003677|GO:0046983
Stsc272152g00002 127 SMART madsneu2 28 87 IPR002100 GO:0003677|GO:0046983
Stsc272152g00002 127 PANTHER MADS BOX PROTEIN 30 112 - -
Stsc272152g00002 127 FunFam Agamous-like MADS-box protein AGL62 40 105 - -
Stsc272152g00002 127 PRINTS MADS domain signature 30 50 IPR002100 GO:0003677|GO:0046983
Stsc272152g00002 127 PRINTS MADS domain signature 65 86 IPR002100 GO:0003677|GO:0046983
Stsc272152g00002 127 PRINTS MADS domain signature 50 65 IPR002100 GO:0003677|GO:0046983
Stsc272152g00002 127 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 40 84 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc272152g00002 Stsc-Chr272152 39114 40747 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc272152g00002 25 101 Type I MADS-box Gene Family AT5G60440 58.442 7.19e-26 97.1
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Stsc272152g00002 SRF-TF 2e-20 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc272152g00002 - - gmx:100782074 134.806