Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc272149g00009 ATGGGAAGAGCTCCATGTTGTGACAAGGCAAATGTGAAGAGAGGGCCATGGTCACCTGAAGAAGACTCCAAGCTCAAAGAATACATAGACAAGCATGGCACTGGTGGCAATTGGATTGCTCTTCCTCAAAAAGCTGGTCTGAAGAGATGTGGGAAAAGTTGCAGACTCAGATGGCTTAACTATCTTAGGCCAAACATTAAGCATGGTGAATTTTCTGAAGAAGAAGACAGAATCATTTGCAGCCTCTATGTTAACATTGGAAGCAGGTGGTCAATTATAGCAGCTCAGTTGCCAGGGAGGACTGACAATGATATCAAGAACTACTGGAACACTAAGCTCAAGAAGAAGCTCATCTCTGGCTTCCTTCCTAATAATGCTTCTTCTGTTCATCAAAGAAAACAACAACCTCAACCTCCATTTCCATCATCATCAATGTATATGGATCAATATTATGGGACAGGCCTTGTTGACCCTATTTCACTTCCTTCAACTGAATATTATGCAAACACAACAACAACAACAACCTCAGTCCCATTTTGTTACCAGCAAAATTATCAAATGTTTGGAAGTGAAGCTAGTTGTTGCAGTTCCTCTGATAATGGAAGCAGTATCAAGCAAGAGGAAATTGGGTATCATCATCAACATCAAGGATCATACAACAACATTGATGAGTTTCTTGTTATGCCTGCTACTAGTAGTTTCAATAATAATAATAATAGTAATAGTATAGTTAATTATGATGGTGGTGATAAAAATAATAATAATATTATTAGTCAATGGAGTAGTACTGAAAAGTCATCATCATCAAGTGGCTATTATGATCTTGAGGATATTAAGCAATTGATTAGTGTTAGCAGTGTTGATGAATTCATCAAGGGTGAGGAGGAGGACAAACCTATGTACAATTACTACTACTACTGA 921 0.3789 MGRAPCCDKANVKRGPWSPEEDSKLKEYIDKHGTGGNWIALPQKAGLKRCGKSCRLRWLNYLRPNIKHGEFSEEEDRIICSLYVNIGSRWSIIAAQLPGRTDNDIKNYWNTKLKKKLISGFLPNNASSVHQRKQQPQPPFPSSSMYMDQYYGTGLVDPISLPSTEYYANTTTTTTSVPFCYQQNYQMFGSEASCCSSSDNGSSIKQEEIGYHHQHQGSYNNIDEFLVMPATSSFNNNNNSNSIVNYDGGDKNNNNIISQWSSTEKSSSSSGYYDLEDIKQLISVSSVDEFIKGEEEDKPMYNYYYY 306
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc272149g00009 306 Gene3D - 69 139 - -
Stsc272149g00009 306 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 62 IPR017930 -
Stsc272149g00009 306 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 63 117 IPR017930 -
Stsc272149g00009 306 ProSiteProfiles Myb-like domain profile. 63 113 IPR001005 -
Stsc272149g00009 306 FunFam Transcription factor RAX3 7 68 - -
Stsc272149g00009 306 SUPERFAMILY Homeodomain-like 11 109 IPR009057 -
Stsc272149g00009 306 ProSiteProfiles Myb-like domain profile. 9 62 IPR001005 -
Stsc272149g00009 306 PANTHER OS09G0431300 PROTEIN 1 273 - -
Stsc272149g00009 306 CDD SANT 16 62 IPR001005 -
Stsc272149g00009 306 CDD SANT 70 113 IPR001005 -
Stsc272149g00009 306 Gene3D - 7 68 - -
Stsc272149g00009 306 SMART sant 13 64 IPR001005 -
Stsc272149g00009 306 SMART sant 67 115 IPR001005 -
Stsc272149g00009 306 Pfam Myb-like DNA-binding domain 69 111 IPR001005 -
Stsc272149g00009 306 Pfam Myb-like DNA-binding domain 14 62 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc272149g00009 Stsc-Chr272149 33571 34960 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc272149g00009 1 118 MYB Transcription Factor Family AT5G57620 91.525 3.69e-79 242
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Stsc272149g00009 Myb_DNA-binding 2.1e-14 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc272149g00009 K09422 - gmx:100779919 310.842