Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc272149g00006 ATGAACCGATCCGGTTACGGCAGCGACGGAATATATAGGTCCTTGAGACCTTCCTTTTCCCTCCCCAAAACCACTACCTCCCTCACCTCCTTCCTCTTCCAAACCACCACCTCCTCCTTCGCTTCCAAAACCGCTCTCATCGACGCCGACACCTCCGAAACCCTCACCTTCCGCCAACTCAAAACCACCGTCGCCAAGCTCTCCCACGCCCTCCTCCGCCTCGGCCTCAAAAAACACGACGTCATACTCATCTTCGCCCCGAACTCCATCCACTTCCCAATCTTCTTCCTCGCCGCCACGGCCATCGGCGCCGTCGTCACCACCGCCAATCCACTCTACACCGTAACTGAACTCTCCAAACAAATCAACAACTCCAACCCGAAGCTCGCCGTCACAGTTCCAGAGTTACACGAGAAACTCAGATCCTTCAAGTTCAAATTCCCCGCGATCTTAATCGGTTCCGAAACGACACCAGAAACAATCAGTTATAGTCGTTTAATAGAACAATTCTCAGAGTCAACAAGTGAAAACTTACCAGTAAACGACGTGAACCAACACGATACGGCAGCGCTTCTTTATTCCTCCGGAACGACGGGAGTGAGCAAGGGCGTGATCCTCACGCACGGGAATTTCATAGCGGCTGCGTTGATGATCGCAATGGACGACGATTACGCGGACGAGATTGACGGAGTAAACGACGGTGTATACATGTGCGTTTTGCCAATGTTCCACGTGTTCGGTTTGGCGGTTATCATGTACGCGCAGCTAAGGAGAGGGAGCACTGTAATTTCAATGAGGAGATTCGAGTTGAAGAAGTTTCTAGAAGGTATTCAGAATTACAAGGTAACGAACCTGTGGGTTGTGCCTCCGATTATTCTTGCGATGGCGAAGCAGAGTGTGGTGGGTAAGTATGACGTGTCATCTTTGAGAAGGATTGGCTCCGGTGCTGCCCCCCTTGGGAAGGACTTGATGCAAGATTGTGCCAAGCGTTTTCCTCATGCTACTCTTATTCAGGGGTATGGCATGACGGAAACTTGTGGTATTATCTCTGTGGAGAATCCTAGAGCAGGGGTTCGTCATAGCGGTTCAACCGGAATGCTGGTTTCAGGGGTGGAAGCTCAGGTTGTCAGTGTTGATGAGCACAAGCCTCTTCCTCCTAAACAATTGGGTGAGATTTGGGTACGGGGTCCAAATATGATGAAAGGTTATTTTAAGAATCCAGAGGCTACAAGATCAACTATAGATGAGAATGGGTGGGTCCATACTGGAGATCTTGGATATTTTGATGAGGAGGGTCAACTTTATGTTGTTGACCGTCTCAAAGAACTCATCAAGTATAAAGGTCTTCAGGTTGCACCAGCAGAACTTGAAGGACTTCTCGTTTCTCACCCTGAGATACTAGATGCTGTTGTCATCCCATATCCGGATGATGAAGCTGGGGAGGTTCCAATTGCCTTTGTTGTTCGTTCACCCAACAACACTTCACTCACTGAACAAGATGTTCAGAAGTTTATTGCTAATCAGGTTGCACCATACAAAAGATTACGAAGAGTGACATTCATCAACAGTGTTCCAAAGACAGCTTCAGGAAAGATACTCAGAAGAGACCTCATAGCACAAGTACGATCCAATTCCAAACTATAA 1644 0.483 MNRSGYGSDGIYRSLRPSFSLPKTTTSLTSFLFQTTTSSFASKTALIDADTSETLTFRQLKTTVAKLSHALLRLGLKKHDVILIFAPNSIHFPIFFLAATAIGAVVTTANPLYTVTELSKQINNSNPKLAVTVPELHEKLRSFKFKFPAILIGSETTPETISYSRLIEQFSESTSENLPVNDVNQHDTAALLYSSGTTGVSKGVILTHGNFIAAALMIAMDDDYADEIDGVNDGVYMCVLPMFHVFGLAVIMYAQLRRGSTVISMRRFELKKFLEGIQNYKVTNLWVVPPIILAMAKQSVVGKYDVSSLRRIGSGAAPLGKDLMQDCAKRFPHATLIQGYGMTETCGIISVENPRAGVRHSGSTGMLVSGVEAQVVSVDEHKPLPPKQLGEIWVRGPNMMKGYFKNPEATRSTIDENGWVHTGDLGYFDEEGQLYVVDRLKELIKYKGLQVAPAELEGLLVSHPEILDAVVIPYPDDEAGEVPIAFVVRSPNNTSLTEQDVQKFIANQVAPYKRLRRVTFINSVPKTASGKILRRDLIAQVRSNSKL 547
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc272149g00006 547 PANTHER LONG-CHAIN-FATTY-ACID--COA LIGASE 9 539 - -
Stsc272149g00006 547 Gene3D - 442 545 IPR045851 -
Stsc272149g00006 547 Gene3D - 9 441 IPR042099 -
Stsc272149g00006 547 FunFam 4-coumarate--CoA ligase 2 442 544 - -
Stsc272149g00006 547 Pfam AMP-binding enzyme 34 446 IPR000873 -
Stsc272149g00006 547 SUPERFAMILY Acetyl-CoA synthetase-like 26 543 - -
Stsc272149g00006 547 Pfam AMP-binding enzyme C-terminal domain 455 531 IPR025110 -
Stsc272149g00006 547 ProSitePatterns Putative AMP-binding domain signature. 191 202 IPR020845 -
Stsc272149g00006 547 CDD 4CL 25 537 - -
Stsc272149g00006 547 FunFam Long-chain-fatty-acid--CoA ligase FadD 13 441 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc272149g00006 Stsc-Chr272149 19233 21636 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc272149g00006 1 543 Monolignol Biosynthesis Gene Families AT4G05160 64.674 0.0 733
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc272149g00006 K01904 - gmx:100808944 724.546