Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc272149g00003 ATGTTGGCAGGGTCAATAGCTTGGTTCTCCTTTCTGAATGTAACCAATTTCTCACCTATTACACATTCTTTGGAGATAGAGTCCCTATCAGTTACATTCCATGGACATGATCTGATAGTTGATTCTGAGTTGGAGTTAAACTATGGAAGACGCTATGGTTTACTTGGGTTAAATGGATGTGGAAAATCCACTTTGCTTACGGCAATAGGTTGCCGGGAACTTCCAATTCCAGAACACATGGATATCTATCACCTTAGCAGGGAAATTGAAGCCACAGATATGTCTGCGTTGGAAGCAGTCATAAACTGTGATGAGGAGAGATTGAAGTTGGAAAAAGAAGCTGAAGCTTTAGCAGCTCAGGATGATGGTGGTGGTGAAACTCTTGAACGTATTTATGAACGATTAGAGGCCCTAGATGCAGCAACAGCGGAAAAGCGTGCTGCTGAAATTTTACATGGTCTTGGGTTCAACAAGGAGATGCAAGCAAAGAAGACACAAGATTTTTCTGGTGGCTGGAGAATGAGAATTGCGTTAGCTCGAGCTCTATTTATGAACCCGACCATTCTTCTTCTTGATGAACCAACCAATCACCTTGATTTGGAAGCTTGTGTGTGGCTTGAGGAGACCTTGAAGAAGTTTGACCGTATACTGGTTGTGATTTCACACTCTCAGGATTTCCTTAATGGTGTCTGCACAAATATTATCCACATGCAAAACAGAAAACTAAAGCTTTACACTGGTAATTATGACCAATATGTTCAGACCCGTTCTGAGTTGGAAGAGAACCAGATGAAGCAGTACAAATGGGAGCAAGAGCAGATTGCCTCGATGAAGGAATATATTGCCCGATTCGGCCATGGTTCGGCAAAACTGGCTCGCCAAGCACAAAGTAAAGAGAAAACACTGGCTAAAATGGAACGGGGTGGACTTACAGAGAAAGTGGTTAGAGACAAAGTCTTGGTGTTCCATTTTACTGATGTGGGGAAACTTCCCCCTCCTGTTCTCCAGTTTGTCGAAGTGACGTTTGGCTATACCCCTGATAATCTCATCTACAAGAAGATCGACTTTGGTGTTGATTGTGACTCTAGGGTAGCCCTGGTTGGACCCAACGGTGCTGGAAAGAGTACACTACTGAAGCTTATGACGGGTGACTTGATTCCCAATGATGGCATGGTCCGGCGACACAACCACCTTCGAATTGCTCAATTTCACCAGCACTTGGCTGATAAGCTGGACATGGATATGTCTGCACTCCAGTTTATGATGAAAGAGTACCCTGGAAATGAGGAAGAGAAGATGAGAGCAGCTATTGGGAAGTTTGGGCTGTCAGGTAAAGCTCAGATAATGCCTATGAAGAACTTGTCTGATGGGCAGAGGAGCCGCGTGATATTTGCATGGCTAGCCTGGAAGCAGCCTCATTTGCTACTTCTGGATGAGCCAACTAATCATTTGGATATCGAGACAATCGACTCACTGGCCGAAGCATTGAATGAATGGGATGGCGGCATGGTGCTTGTTAGCCATGACTTCAGGCTCATAAACCAGGTGGCCCATGAGATATGGGTGTGTGCAAATCAAACTATCACAAGATGGAATGGTGATATCATGGACTTCAAGATGCATCTGAAATCCCAGGCAGGCTTATCTGACTGA 1653 0.4453 MLAGSIAWFSFLNVTNFSPITHSLEIESLSVTFHGHDLIVDSELELNYGRRYGLLGLNGCGKSTLLTAIGCRELPIPEHMDIYHLSREIEATDMSALEAVINCDEERLKLEKEAEALAAQDDGGGETLERIYERLEALDAATAEKRAAEILHGLGFNKEMQAKKTQDFSGGWRMRIALARALFMNPTILLLDEPTNHLDLEACVWLEETLKKFDRILVVISHSQDFLNGVCTNIIHMQNRKLKLYTGNYDQYVQTRSELEENQMKQYKWEQEQIASMKEYIARFGHGSAKLARQAQSKEKTLAKMERGGLTEKVVRDKVLVFHFTDVGKLPPPVLQFVEVTFGYTPDNLIYKKIDFGVDCDSRVALVGPNGAGKSTLLKLMTGDLIPNDGMVRRHNHLRIAQFHQHLADKLDMDMSALQFMMKEYPGNEEEKMRAAIGKFGLSGKAQIMPMKNLSDGQRSRVIFAWLAWKQPHLLLLDEPTNHLDIETIDSLAEALNEWDGGMVLVSHDFRLINQVAHEIWVCANQTITRWNGDIMDFKMHLKSQAGLSD 550
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc272149g00003 550 Pfam ABC transporter 42 196 IPR003439 GO:0005524
Stsc272149g00003 550 PANTHER ATP-BINDING TRANSPORT PROTEIN-RELATED 22 545 - -
Stsc272149g00003 550 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 24 264 IPR003439 GO:0005524
Stsc272149g00003 550 Pfam ABC transporter 352 482 IPR003439 GO:0005524
Stsc272149g00003 550 Coils Coil 242 262 - -
Stsc272149g00003 550 Coils Coil 100 120 - -
Stsc272149g00003 550 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 335 550 IPR003439 GO:0005524
Stsc272149g00003 550 Pfam ABC transporter 235 307 IPR032781 -
Stsc272149g00003 550 CDD ABCF_EF-3 24 241 - -
Stsc272149g00003 550 CDD ABCF_EF-3 335 527 - -
Stsc272149g00003 550 FunFam Abc transporter f family member 1 24 288 - -
Stsc272149g00003 550 ProSitePatterns ABC transporters family signature. 168 182 IPR017871 GO:0005524|GO:0016887
Stsc272149g00003 550 Gene3D - 299 548 IPR027417 -
Stsc272149g00003 550 SMART AAA_5 360 527 IPR003593 GO:0016887
Stsc272149g00003 550 SMART AAA_5 48 250 IPR003593 GO:0016887
Stsc272149g00003 550 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 317 530 IPR027417 -
Stsc272149g00003 550 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 12 271 IPR027417 -
Stsc272149g00003 550 FunFam ATP-binding cassette sub-family F member 3 295 549 - -
Stsc272149g00003 550 Gene3D - 22 288 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc272149g00003 Stsc-Chr272149 2887 6725 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc272149g00003 155 222 Calmodulin-binding Proteins AT2G36910 42.857 2.48e-08 55.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc272149g00003 K06185 - gmx:100809491 974.156