Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc272149g00002 ATGGTGTCGGACGCGAGCAAGAAGAAGGCTGCGCAGAAGAAGATCGCCGCCGCAGCTAAGAGAGGCGGCAAGGCTGCGGCTGCCGCGGTTGCTTCCAAGGTAGCGGCGGTTGACGCTCATAAGGCGGCTGTTAAGGTGGCGAATGAGATCGCCGACCTTCGTATATCGGATCGTACTTGCACCGGCGTCCTCTGCTCCCATCCTCTGTCCAGGGATATTCGGATAGAGTCCCTATCAGTTACATTCCATGGACATGATCTGATAGTTGATTCTGAGTTGGAGTTAAACTATGGAAGACGCTATGGTTTACTTGGGTTAAATGGATGTGGAAAATCCACTTTGCTTACGGCAATAGGTTGCCGGGAACTTCCAATTCCAGAACACATGGATATCTATCACCTTAGCAGGGAAATTGAAGCCACAGATATGTCTGCGTTGGAAGCAGTCATAAACTGTGATGAGGAGAGATTGAAGTTGGAAAAAGAAGCTGAAGCTTTAGCAGCTCAGGATGATGGTGGTGGTGAAACTCTTGAACGTATTTATGAACGATTAGAGGCCCTAGATGCAGCAACAGCGGAAAAGCGTGCTGCTGAAATTTTACATGGTCTTGGGTTCAACAAGGAGATGCAAGCAAAGAAGACACAAGATTTTTCTGGTGGCTGGAGAATGAGAATTGCGTTAGCTCGAGCTCTATTTATGAACCCGACCATTCTTCTTCTTGATGAACCAACCAATCACCTTGATTTGGAAGCTTGTGTGTGGCTTGAGGAGACCTTGAAGAAGTTTGACCGTATACTGGTTGTGATTTCACACTCTCAGGATTTCCTTAATGGTGTCTGCACAAATATTATCCACATGCAAAACAGAAAACTAAAGCTTTACACTGGTAATTATGACCAATATGTTCAGACCCGTTCTGAGTTGGAAGAGAACCAGATGAAGCAGTACAAATGGGAGCAAGAGCAGATTGCCTCGATGAAGGAATATATTGCCCGATTCGGCCATGGTTCGGCAAAACTGGCTCGCCAAGCACAAAGTAAAGAGAAAACACTGGCTAAAATGGAACGGGGTGGACTTACAGAGAAAGTGGTTAGAGACAAAGTCTTGGTGTTCCATTTTACTGATGTGGGGAAACTTCCCCCTCCTGTTCTCCAGTTTGTCGAAGTGACGTTTGGCTATACCCCTGATAATCTCATCTACAAGAAGATCGACTTTGGTGTTGATTGTGACTCTAGGGTAGCCCTGGTTGGACCCAACGGTGCTGGAAAGAGTACACTACTGAAGCTTATGACGGGTGACTTGATTCCCAATGATGGCATGGTCCGGCGACACAACCACCTTCGAATTGCTCAATTTCACCAGCACTTGGCTGATAAGCTGGACATGGATATGTCTGCACTCCAGTTTATGATGAAAGAGTACCCTGGAAATGAGGAAGAGAAGATGAGAGCAGCTATTGGGAAGTTTGGGCTGTCAGGTAAAGCTCAGATAATGCCTATGAAGAACTTGTCTGATGGGCAGAGGAGCCGCGTGATATTTGCATGGCTAGCCTGGAAGCAGCCTCATTTGCTACTTCTGGATGAGCCAACTAATCATTTGGATATCGAGACAATCGACTCACTGGCCGAAGCATTGAATGAATGGGATGGCGGCATGGTGCTTGTTAGCCATGACTTCAGGCTCATAAACCAGGTGGCCCATGAGATATGGGTGTGTGCAAATCAAACTATCACAAGATGGAATGGTGATATCATGGACTTCAAGATGCATCTGAAATCCCAGGCAGGCTTATCTGACTGA 1800 0.4667 MVSDASKKKAAQKKIAAAAKRGGKAAAAAVASKVAAVDAHKAAVKVANEIADLRISDRTCTGVLCSHPLSRDIRIESLSVTFHGHDLIVDSELELNYGRRYGLLGLNGCGKSTLLTAIGCRELPIPEHMDIYHLSREIEATDMSALEAVINCDEERLKLEKEAEALAAQDDGGGETLERIYERLEALDAATAEKRAAEILHGLGFNKEMQAKKTQDFSGGWRMRIALARALFMNPTILLLDEPTNHLDLEACVWLEETLKKFDRILVVISHSQDFLNGVCTNIIHMQNRKLKLYTGNYDQYVQTRSELEENQMKQYKWEQEQIASMKEYIARFGHGSAKLARQAQSKEKTLAKMERGGLTEKVVRDKVLVFHFTDVGKLPPPVLQFVEVTFGYTPDNLIYKKIDFGVDCDSRVALVGPNGAGKSTLLKLMTGDLIPNDGMVRRHNHLRIAQFHQHLADKLDMDMSALQFMMKEYPGNEEEKMRAAIGKFGLSGKAQIMPMKNLSDGQRSRVIFAWLAWKQPHLLLLDEPTNHLDIETIDSLAEALNEWDGGMVLVSHDFRLINQVAHEIWVCANQTITRWNGDIMDFKMHLKSQAGLSD 599
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc272149g00002 599 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 65 320 IPR027417 -
Stsc272149g00002 599 Coils Coil 149 169 - -
Stsc272149g00002 599 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 73 313 IPR003439 GO:0005524
Stsc272149g00002 599 FunFam Abc transporter f family member 1 73 337 - -
Stsc272149g00002 599 Pfam ABC transporter 401 531 IPR003439 GO:0005524
Stsc272149g00002 599 Gene3D - 348 597 IPR027417 -
Stsc272149g00002 599 Coils Coil 291 311 - -
Stsc272149g00002 599 Pfam ABC transporter 91 245 IPR003439 GO:0005524
Stsc272149g00002 599 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 384 599 IPR003439 GO:0005524
Stsc272149g00002 599 Gene3D - 73 337 IPR027417 -
Stsc272149g00002 599 ProSitePatterns ABC transporters family signature. 217 231 IPR017871 GO:0005524|GO:0016887
Stsc272149g00002 599 CDD ABCF_EF-3 384 576 - -
Stsc272149g00002 599 CDD ABCF_EF-3 73 290 - -
Stsc272149g00002 599 SMART AAA_5 97 299 IPR003593 GO:0016887
Stsc272149g00002 599 SMART AAA_5 409 576 IPR003593 GO:0016887
Stsc272149g00002 599 FunFam ATP-binding cassette sub-family F member 3 344 598 - -
Stsc272149g00002 599 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 366 579 IPR027417 -
Stsc272149g00002 599 PANTHER ATP-BINDING TRANSPORT PROTEIN-RELATED 42 594 - -
Stsc272149g00002 599 Pfam ABC transporter 284 356 IPR032781 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc272149g00002 Stsc-Chr272149 2887 6725 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc272149g00002 204 271 Calmodulin-binding Proteins AT2G36910 42.857 3.65e-08 54.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc272149g00002 K06185 - gmx:100809491 1028.08