Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc272149g00001 ATGGCTGAGGTGAAAGCAAGAAATAGAAGCAGCAGAAACAAAAAGAAGGGTTTAAGTGGTGGTGGCATTTTGAAGGTCAAGAGTCTTTTGAAAAAGCTTCAGAAGGTTGTGTTATTACTAGTAGGCAAAAACAACAAGCCAAGTTCATCATCATCAATAATATCAGTAGCTGAGGATGTGAAAAAAGGGCATTTTGCTGTGATTGTGATTGCTGTTGAAGGACCAAAGAGATTCTTGGTGCCATTGAGTTGCTTAAAAAACCCTGCTTTCTTGAGTTTGTTGGAGAGAGCAGCTGAAGAGTATGGTTTTGATCAGCATGGTGCAATTACCATTCCTTGTAACCCTAGTGACCTTGAGACCTTACTGGCTCATCATCAACTGGAGGAAGAGGAAGATGATAAATCTTAA 408 0.3995 MAEVKARNRSSRNKKKGLSGGGILKVKSLLKKLQKVVLLLVGKNNKPSSSSSIISVAEDVKKGHFAVIVIAVEGPKRFLVPLSCLKNPAFLSLLERAAEEYGFDQHGAITIPCNPSDLETLLAHHQLEEEEDDKS 135
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc272149g00001 135 PANTHER AUXIN-INDUCED PROTEIN-LIKE-RELATED 43 121 IPR003676 GO:0009733
Stsc272149g00001 135 Pfam Auxin responsive protein 35 123 IPR003676 GO:0009733
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc272149g00001 Stsc-Chr272149 2005 2412 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc272149g00001 59 122 Calmodulin-binding Proteins AT5G20810 50.000 8.29e-13 60.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc272149g00001 - K14488 csv:101212725 112.464