Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc272148g00002 ATGTCCGAACCCAATGCGGGCGCTGAAATCCCTCAGAACAAGACCATCTACATCAACAACCTTAACGAAAAGATTAAGCTTGATGAGTTGAAGAAGTCTTTGAACGCTGTTTTCTCTCAGTTCGGGAAGATACTGGAAGTGCTAGCGTTCAAGACTCTGAAGCACAAGGGTCAAGCTTGGGTGGTGTTTGACGATGTTAATTCCGCATCCAATGCTCTTAGGCAAATGCAAGGTTTCCCCTTCTACGACAAGCCAATGAAAATACAGTATGCAAAGACTAAATCAGATATAATAGCAAAAGCTGATGGTACCTTTGTTCCAAGAGAAAAACGGAAGAGGCATGATGACAAAGGCAAAAAACGGAAGGATCAACATGATTCTAGTTTAGCTGGAATGGGTGTAAATCCAGCTTATGCCGGTGCCTATGGTGCAGCTCCTGCTGTATCTTATCCAGGTGGTGCAAAATCTATGGTACCTGAGGTTCCTGCCCCACCAAATAACATTCTCTTCATCCAAAATCTACCCAATGAGACAACTCCCATGATGCTGCAAATGCTCTTTCTTCAATATCCTGGTTTCAAGGAAGTTAGGATGGTGGAAGCGAAGCCAGGAATTGCATTTGTGGAATATGGAGATGAGATGCAATCAACGGTAGCAATGCAGGCCCTACAGGGTTTCAAGATAACACCACATAACCCGATGTTGATAACTTATGCCAAGAAATAG 726 0.4353 MSEPNAGAEIPQNKTIYINNLNEKIKLDELKKSLNAVFSQFGKILEVLAFKTLKHKGQAWVVFDDVNSASNALRQMQGFPFYDKPMKIQYAKTKSDIIAKADGTFVPREKRKRHDDKGKKRKDQHDSSLAGMGVNPAYAGAYGAAPAVSYPGGAKSMVPEVPAPPNNILFIQNLPNETTPMMLQMLFLQYPGFKEVRMVEAKPGIAFVEYGDEMQSTVAMQALQGFKITPHNPMLITYAKK 241
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc272148g00002 241 FunFam U2 small nuclear ribonucleoprotein B'' 158 241 - -
Stsc272148g00002 241 CDD RRM1_U1A_like 15 92 - -
Stsc272148g00002 241 PANTHER U1 SMALL NUCLEAR RIBONUCLEOPROTEIN A/U2 SMALL NUCLEAR RIBONUCLEOPROTEIN B 11 93 - -
Stsc272148g00002 241 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 167 241 IPR000504 GO:0003723
Stsc272148g00002 241 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 14 93 IPR000504 GO:0003723
Stsc272148g00002 241 CDD RRM2_U1A_like 165 237 - -
Stsc272148g00002 241 FunFam U1 small nuclear ribonucleoprotein A 8 113 - -
Stsc272148g00002 241 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 169 229 IPR000504 GO:0003723
Stsc272148g00002 241 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 16 86 IPR000504 GO:0003723
Stsc272148g00002 241 SUPERFAMILY RNA-binding domain, RBD 12 230 IPR035979 GO:0003676
Stsc272148g00002 241 SMART rrm1_1 15 89 IPR000504 GO:0003723
Stsc272148g00002 241 SMART rrm1_1 168 237 IPR000504 GO:0003723
Stsc272148g00002 241 Gene3D - 7 113 IPR012677 -
Stsc272148g00002 241 Gene3D - 156 241 IPR012677 -
Stsc272148g00002 241 MobiDBLite consensus disorder prediction 103 131 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc272148g00002 Stsc-Chr272148 4332 7614 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc272148g00002 13 128 Eukaryotic Initiation Factors Gene Family AT4G34110 29.508 8.31e-06 44.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc272148g00002 K11091 - gmx:100777062 420.239