Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc272147g00009 ATGTCGCTGAGGCCGAGTGAGAGGACGGAGGTTCGACGGAACCGGTACAAGGTGGCGGTGGATGCGGACGAGGGTCGCCGGAGGAGGGAGGACAACATGGTGGAGATCCGGAAGAGTAAGCGCGAGGAGAGCCTACTCAAGAAGCGCCGCGAGGGCCTCCAAGCTCAGCAGCTCCTCCAGCAGCAGCAGCAACCGCAGCAATTCCCAACCAATCTTCTTCAAGCATCATCCATCATCGAGAAAAAGTTGGAGAGTCTTCCTGCTATGGTCGCTGGGGTGATGTCCAATGATAACAGCCAGCAACTTGATGCTACCACACAATTTAGGAAGCTGCTCTCAATAGAGCGCAGCCCACCGATTGAGGAAGTTATCCAAGCTGGTGTTGTGCCGCGGTTTGTTGAGTTTCTCCATAGGGATGATTTCCCGCAACTTCAGTTTGAGGCTGCATGGGCTCTCACAAACATAGCGTCTGGAACTTCTGAGAACACTAAGGTGGCTGTCTGGGCTTTGGGAAATGTCGCTGGTGACTCTCCTAGGTGCCGTGATCTTGTTCTCGGCCATGGTGCTCTGATCCCACTATTAGCCCAGCTGAATGAGCATGCTAAACTTTCAATGCTGAGAAATGCCACATGGACTCTGTCAAACTTCTGCAGGGGGAAGCCACAGCCTCCATTTGAACATGTGAAACCAGCACTTCCAACTCTTGAGCGGTTGGTCTTCTCAAATGATGAAGAGGTTCTGACAGATGCATGCTGGGCACTTTCCTATCTTTCTGATGGAACAAATGATAAAATCCAAGCAGTTATTGAGGCAGGTGTATGCAGCAGACTGGTGCAGCTTCTTTTGCACCCATCTCCTTCGGTGCTGATTCCTGCTCTTCGTACTGTGGGAAATATTGTGACAGGAGACGACATTCAAACTCAGGCTATCATCAATCATGGTGCACTCCCGTGCCTTATGAACCTGTTGACGCATAATCACAAAAAGAGCATCAAGAAAGAAGCTTGCTGGACTATTTCAAATGTTACAGCTGGAAATAGAGATCAAATACAGGCTGTTATTGATGCTGGTCTGATTGCTCCCCTTGTCAATCTTCTTCAAAATGCTGAGTTTGACATTAAAAAAGAAGCTGCATGGGCAATCTCTAATGCTACATCTGGTGGTAGTCATGAACAGATCAAGTATTTGGTTAGCCAAGGTTGCATTAAGCCTCTGTGTGATCTGCTTGTTTGTCCCGACCCAAGAATTGTCACCGTTTGTTTAGAAGGCCTGGAGAATATTCTAAAGATCGGGGAATCCGAGAAGACAATGGGTAACAGTGGAGATGTTAACTTGTATGCTCAGATGATTGATGATGCTGAGGGATTGGAGAAAATCGAAAACCTTCAGAGTCATGACAATAATGAAATATACGAGAAGGCTGTTAAAATTCTTGAAACATACTGGTTGGAGGATGAAGATGAGACACTACCTCCAGGCGACGTTGCTCAACCTGGTTTCAATTTCGGTGGCAATGAGGTTCCAGTCCCATCTGGCGGATTCAACTTTAGTTGA 1554 0.4768 MSLRPSERTEVRRNRYKVAVDADEGRRRREDNMVEIRKSKREESLLKKRREGLQAQQLLQQQQQPQQFPTNLLQASSIIEKKLESLPAMVAGVMSNDNSQQLDATTQFRKLLSIERSPPIEEVIQAGVVPRFVEFLHRDDFPQLQFEAAWALTNIASGTSENTKVAVWALGNVAGDSPRCRDLVLGHGALIPLLAQLNEHAKLSMLRNATWTLSNFCRGKPQPPFEHVKPALPTLERLVFSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCSRLVQLLLHPSPSVLIPALRTVGNIVTGDDIQTQAIINHGALPCLMNLLTHNHKKSIKKEACWTISNVTAGNRDQIQAVIDAGLIAPLVNLLQNAEFDIKKEAAWAISNATSGGSHEQIKYLVSQGCIKPLCDLLVCPDPRIVTVCLEGLENILKIGESEKTMGNSGDVNLYAQMIDDAEGLEKIENLQSHDNNEIYEKAVKILETYWLEDEDETLPPGDVAQPGFNFGGNEVPVPSGGFNFS 517
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc272147g00009 517 Gene3D - 11 50 IPR036975 GO:0006606
Stsc272147g00009 517 SUPERFAMILY ARM repeat 12 488 IPR016024 -
Stsc272147g00009 517 SMART arm_5 389 429 IPR000225 GO:0005515
Stsc272147g00009 517 SMART arm_5 346 386 IPR000225 GO:0005515
Stsc272147g00009 517 SMART arm_5 220 259 IPR000225 GO:0005515
Stsc272147g00009 517 SMART arm_5 261 301 IPR000225 GO:0005515
Stsc272147g00009 517 SMART arm_5 116 157 IPR000225 GO:0005515
Stsc272147g00009 517 SMART arm_5 303 344 IPR000225 GO:0005515
Stsc272147g00009 517 SMART arm_5 176 218 IPR000225 GO:0005515
Stsc272147g00009 517 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 314 357 IPR000225 GO:0005515
Stsc272147g00009 517 Gene3D - 84 483 IPR011989 -
Stsc272147g00009 517 FunFam Importin subunit alpha 164 483 - -
Stsc272147g00009 517 Pfam Atypical Arm repeat 444 490 IPR032413 -
Stsc272147g00009 517 Coils Coil 36 56 - -
Stsc272147g00009 517 PIRSF Importin_alpha 164 516 IPR024931 GO:0005737|GO:0006606|GO:0061608
Stsc272147g00009 517 PIRSF Importin_alpha 2 167 IPR024931 GO:0005737|GO:0006606|GO:0061608
Stsc272147g00009 517 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 357 385 IPR000225 GO:0005515
Stsc272147g00009 517 FunFam Importin subunit alpha 11 50 - -
Stsc272147g00009 517 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 127 165 IPR000225 GO:0005515
Stsc272147g00009 517 Pfam Importin beta binding domain 12 106 IPR002652 GO:0006606|GO:0061608
Stsc272147g00009 517 ProSiteProfiles IBB domain profile. 1 58 IPR002652 GO:0006606|GO:0061608
Stsc272147g00009 517 Pfam Armadillo/beta-catenin-like repeat 117 157 IPR000225 GO:0005515
Stsc272147g00009 517 Pfam Armadillo/beta-catenin-like repeat 231 258 IPR000225 GO:0005515
Stsc272147g00009 517 Pfam Armadillo/beta-catenin-like repeat 177 218 IPR000225 GO:0005515
Stsc272147g00009 517 Pfam Armadillo/beta-catenin-like repeat 390 427 IPR000225 GO:0005515
Stsc272147g00009 517 Pfam Armadillo/beta-catenin-like repeat 306 343 IPR000225 GO:0005515
Stsc272147g00009 517 Pfam Armadillo/beta-catenin-like repeat 346 385 IPR000225 GO:0005515
Stsc272147g00009 517 Pfam Armadillo/beta-catenin-like repeat 262 300 IPR000225 GO:0005515
Stsc272147g00009 517 PANTHER IMPORTIN ALPHA 12 486 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc272147g00009 Stsc-Chr272147 36482 39512 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc272147g00009 310 456 U-box Gene Family AT2G23140 29.054 3.94e-06 47.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc272147g00009 K15042 - gmx:100780020 919.072