Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc272146g00004 ATGGAGGAAGTATGGGCAGAAACCAATCAAGGGTTCGCCTCACCCGAGGTGGATGAGAAAAACATTATAGACTTCAATGCTTCCGGAGTTTTCTTATGTAATATCATCCACTTGTATCTCTTTATGTTTTGGTACAAGCCTTGTATCCACAATTCTAGCAACTGCCATGCAATAAGGCGGTCCGACACACGAGGTTTCGGCCTAATGGGATATTATAAGTGCAGCAGCATGAGAGGGTGCCCTGCAAGGAAGCATGTTGAGAGGTGCTTAGAAGAGCCTACAATGCTAATTGTTACCTATGAAGGAGACCATAACCATCCAAAGCTACCAACACAATCTGCAAATGCATGA 351 0.4416 MEEVWAETNQGFASPEVDEKNIIDFNASGVFLCNIIHLYLFMFWYKPCIHNSSNCHAIRRSDTRGFGLMGYYKCSSMRGCPARKHVERCLEEPTMLIVTYEGDHNHPKLPTQSANA 116
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc272146g00004 116 SMART WRKY_cls 51 108 IPR003657 GO:0003700|GO:0006355|GO:0043565
Stsc272146g00004 116 ProSiteProfiles WRKY domain profile. 70 109 IPR003657 GO:0003700|GO:0006355|GO:0043565
Stsc272146g00004 116 Pfam WRKY DNA -binding domain 70 107 IPR003657 GO:0003700|GO:0006355|GO:0043565
Stsc272146g00004 116 PANTHER WRKY TRANSCRIPTION FACTOR 21-RELATED 70 114 IPR044810 GO:0003700
Stsc272146g00004 116 Gene3D WRKY domain 44 110 IPR036576 GO:0003700|GO:0006355|GO:0043565
Stsc272146g00004 116 SUPERFAMILY WRKY DNA-binding domain 70 108 IPR036576 GO:0003700|GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc272146g00004 Stsc-Chr272146 28992 30034 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc272146g00004 70 113 WRKY Transcription Factor Family AT2G30590 86.364 3.49e-24 93.2
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Stsc272146g00004 WRKY 1.4e-12 CL0274