Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc272145g00004 ATGGCTAAATTTCAGTCTCATCACACTACTACTCCACCAGCAATAAGCCCTACAATAAGCAAACCATGTTACCCTCCACAACCTCCCAACAACAACAATTCAAGCAGCTTCAACTTAATGGTTATTTTGGCAGCAATTGTCTGCGCTTTCCTTTGCGCGCTAGGCCTTAACACAATGCTACTATGCGTCCTACAATGCGCGAGCCGCGTCCTTATGGAGCCCTTACAATGGATTGCTTCTAGAAGGATCAACTCAGGGCTCAAGAAGAAAGAAATGGTGGCTTTGCCAACCTCAGTTTATGATAGTAAGAGCCATAATAATAGTACTAGTGGTGATTCAGGGTCATCACCATCTTCAGATTCTTCTAATTGTGCGATTTGCCTAAATGATTTCTGTGATGGAGACAAGATAAGGTTTCTTCCAAAGTGTAATCATGGTTTTCATGTGGCTTGCATTGATAAGTGGCTTCTTTCACATTCTTCTTGCCCAACATGTAGGAGCTTCCTCAAGTCCAATGCTTCAGCTTCAGCACACCCTTTTCATATTCTCATAGCTTAA 558 0.4247 MAKFQSHHTTTPPAISPTISKPCYPPQPPNNNNSSSFNLMVILAAIVCAFLCALGLNTMLLCVLQCASRVLMEPLQWIASRRINSGLKKKEMVALPTSVYDSKSHNNSTSGDSGSSPSSDSSNCAICLNDFCDGDKIRFLPKCNHGFHVACIDKWLLSHSSCPTCRSFLKSNASASAHPFHILIA 185
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc272145g00004 185 SUPERFAMILY RING/U-box 123 172 - -
Stsc272145g00004 185 CDD RING-H2_EL5-like 124 166 - -
Stsc272145g00004 185 PANTHER RING-H2 FINGER PROTEIN ATL61-RELATED-RELATED 25 169 - -
Stsc272145g00004 185 SMART ring_2 124 165 IPR001841 -
Stsc272145g00004 185 MobiDBLite consensus disorder prediction 1 17 - -
Stsc272145g00004 185 Pfam Ring finger domain 123 166 IPR001841 -
Stsc272145g00004 185 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 77 171 IPR013083 -
Stsc272145g00004 185 MobiDBLite consensus disorder prediction 1 27 - -
Stsc272145g00004 185 ProSiteProfiles Zinc finger RING-type profile. 124 166 IPR001841 -
Stsc272145g00004 185 MobiDBLite consensus disorder prediction 100 120 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc272145g00004 Stsc-Chr272145 23831 24388 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc272145g00004 25 169 C3H Transcription Factor Family AT2G17450 39.610 2.64e-35 120
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc272145g00004 - - gmx:100803003 206.453