Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc272144g00005 ATGAGGGAGGGCACTGAGAAATTGGAGGATAGACTCAGGCTAGGCGAGAGGCAGGGCCTTGAATCACTCTGCCATTTTAAGCAGTGTGAAGATCTCAAAGTGAAGTACAATGAAGAGATGATAAAGAGAAAAAAGCTCTTCAATGAAGTTCAAGAGGCTAAAGGGAACATTAGGGTTTTCTGCCGTTGCCGTCCCTTGAATAAGGCTGAAATATCAGCTGGGTGTTCTACAGTTGTGGATTTTGATGCAGCTAAGGATGGATGCCTTGGAATTCTGGCAACTGGCTCCTCAAAAAAATCATTTAGATTTGACAGAGTATATACACCAAAAGATGATCAAGTTGATGTTTTTGCCGATGCCTCATCAATGGTAATCTCTGTGTTGGATGGCTACAATGTTTGCATATTTGCTTATGGGCAAACAGGAACAGGAAAGACATTTACCATGGAGGGAACAGAGCTGAATAGAGGAGTAAATTATCGGACTCTTGAGCTCTTGTTCGAAGTTAGCAAACAAAGGAGTGATACATTTTCTTATGACATATCTGTTAGTGTACTTGAGGTTTACAATGAACAGATCAGAGACCTATTGGCCACAGGACCAACATCCAAAAGGTTGGAGATAAAACAGGCCTCCGAAGGATCTCATCACGTTCCTGGCGTTGTAGAAGCTAAAGTTGAAAACATTAAGGAGGTCTGGGATGTACTGCAAGCTGGAAGCAATGCTAGAGCAGTGGGAAGTAATAATGTTAACGAGCATAGTAGTCGATCTCACTGCATGCTCTCTATAATGGTAAAGGCTAAAAATTTGCTGAATGGCGAGTGTACCAAGAGCAAGCTTTGGCTCGTGGATTTGGCGGGTAGTGAGAGACTTGCAAAGACTGATGTACAAGGGGAGCGGCTTAAGGAAGCGCAAAATATCAATCGATCTCTTTCTGCTCTTGGTGATGTCATATCTGCTTTAGCAGCCAAGAGTAGTCATATTCCGTATAGGAACTCAAAATTGACACATTTACTTCAAGATTCTTTGGGGGGTGATGCCAAAACTTTGATGTTCGTGCAAATCAGTCCATCGGACCAGGACTTAGGTGAAACTCTTAGCTCACTTAATTTTGCAACAAGAGCGAGGGGTGTTGAGTTAGGTCCTGTTAAGAAGCAAGTTGACACAAGTGAACTTCAAAAGACAAAAGCAATGGTAGGCTTCTGA 1206 0.4254 MREGTEKLEDRLRLGERQGLESLCHFKQCEDLKVKYNEEMIKRKKLFNEVQEAKGNIRVFCRCRPLNKAEISAGCSTVVDFDAAKDGCLGILATGSSKKSFRFDRVYTPKDDQVDVFADASSMVISVLDGYNVCIFAYGQTGTGKTFTMEGTELNRGVNYRTLELLFEVSKQRSDTFSYDISVSVLEVYNEQIRDLLATGPTSKRLEIKQASEGSHHVPGVVEAKVENIKEVWDVLQAGSNARAVGSNNVNEHSSRSHCMLSIMVKAKNLLNGECTKSKLWLVDLAGSERLAKTDVQGERLKEAQNINRSLSALGDVISALAAKSSHIPYRNSKLTHLLQDSLGGDAKTLMFVQISPSDQDLGETLSSLNFATRARGVELGPVKKQVDTSELQKTKAMVGF 401
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc272144g00005 401 ProSiteProfiles Kinesin motor domain profile. 56 378 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Stsc272144g00005 401 Pfam Kinesin motor domain 62 377 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Stsc272144g00005 401 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 56 389 IPR027417 -
Stsc272144g00005 401 FunFam kinesin-like protein KIN-14R 15 380 - -
Stsc272144g00005 401 Gene3D Kinesin motor domain 9 380 IPR036961 -
Stsc272144g00005 401 ProSitePatterns Kinesin motor domain signature. 278 289 IPR019821 GO:0003777|GO:0005524|GO:0007018
Stsc272144g00005 401 PRINTS Kinesin heavy chain signature 279 297 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Stsc272144g00005 401 PRINTS Kinesin heavy chain signature 130 151 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Stsc272144g00005 401 PRINTS Kinesin heavy chain signature 328 349 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Stsc272144g00005 401 PRINTS Kinesin heavy chain signature 248 265 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Stsc272144g00005 401 CDD KISc_C_terminal 54 380 - -
Stsc272144g00005 401 SMART kinesin_4 54 386 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Stsc272144g00005 401 PANTHER KINESIN-LIKE PROTEIN KLP-3 25 398 IPR027640 GO:0003777|GO:0007018
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc272144g00005 Stsc-Chr272144 29928 32403 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc272144g00005 28 401 Calmodulin-binding Proteins AT5G65930 43.045 1.44e-92 301
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc272144g00005 K10406 - gmx:100800016 677.937