Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc272144g00003 ATGGACGCACCAAATAATAATTCAAAACCTCCACCAAGAACAACAACAACAACAAAAGAACAAGTTGGCGGTGGAGGTGGTGGTGGTGGGAGCAAGAAAAGCAGCACTACTCCAGGTTCCGCCACAGCAACAGAAGAACAGCAACAGCAACAAGCAGCAGTAGCTCTAAAGTGTCCAAGATGCGACTCACCAAACACGAAATTCTGTTACTACAACAACTACAGCCTGACGCAGCCACGTCACTTCTGCAAGACTTGCCGAAGGTACTGGACCAAAGGCGGTGCCTTGAGAAACGTTCCCATTGGCGGTGGCTGCCGCAAGAACAAGAAGCTCAACAAATCTTCCAGATTACTCTCTTCCTCTTCTCCCTCATCATGTGAAGGAGGAAGACCTTCTTCTTCTTCTTCAGACCTTTCTCTTCTTGGTGGTGGCCTTAAGTTCCTCCATGGTCTCGCTTCTTCACTTCCCCTTCCACCTTCTCTTGATTTTCACCTCGCTGCTGCTTCTCCTCCTCCCGGACCCTTACCTTTCCCTTCAAGACTCCACCATCACCATAACCATAACCATAACCATAACCACCCTTCTTCTACCATCTTCAACAACAACAATCACCACTTCGCGAACGGCTTCAACATTGATCCTAATTCTTCTTCTGTGATCGGTTTGAACAGCAATAATAACAACAATTACGCGTTTTCCACGGGGTTAGGTGGTGGTGGTGGTGGTGCAATCGAAGGTTACTCTCATCATCATGGTACTTCCAGTAACATTGCTTCATCTATCGAGTCTTTGAGTTCTATGAACCAGGACTTGCACTGGAAGCTACAGCAGCAAAGGCTAGCCATGCTTTTTGGTGGCGGTGGAGATGATGTCAACAATAATAATCAACCAAAAGACGTCGGTGGTGGCGGTGGCGGTGGTGGACTTGAGAAACCACAACCGATTTTGTTTCAGAATCTTGACGGCTCTTCAATCAACAGAAAAGAAGAGAATAATACAACGGTAATTGCCCCAACTGAGTGGTTCTTTGGAAACTCTTATCCGTCGGTGAACCCTACACCGACTACGAGTACCGGCGGAGGAAGCGGCGGCGGAGGCGGTGGCGACAATGATAATGGAATGAACTGGGTTGGTGTTCATCATGGTTGGAGTGATGTGCAGCATCATCAATACAGTGCTTTGCCCTAG 1188 0.479 MDAPNNNSKPPPRTTTTTKEQVGGGGGGGGSKKSSTTPGSATATEEQQQQQAAVALKCPRCDSPNTKFCYYNNYSLTQPRHFCKTCRRYWTKGGALRNVPIGGGCRKNKKLNKSSRLLSSSSPSSCEGGRPSSSSSDLSLLGGGLKFLHGLASSLPLPPSLDFHLAAASPPPGPLPFPSRLHHHHNHNHNHNHPSSTIFNNNNHHFANGFNIDPNSSSVIGLNSNNNNNYAFSTGLGGGGGGAIEGYSHHHGTSSNIASSIESLSSMNQDLHWKLQQQRLAMLFGGGGDDVNNNNQPKDVGGGGGGGGLEKPQPILFQNLDGSSINRKEENNTTVIAPTEWFFGNSYPSVNPTPTTSTGGGSGGGGGGDNDNGMNWVGVHHGWSDVQHHQYSALP 395
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc272144g00003 395 PANTHER DOF ZINC FINGER PROTEIN DOF1.4-RELATED 38 281 IPR045174 GO:0003700|GO:0006355
Stsc272144g00003 395 MobiDBLite consensus disorder prediction 114 133 - -
Stsc272144g00003 395 MobiDBLite consensus disorder prediction 174 193 - -
Stsc272144g00003 395 MobiDBLite consensus disorder prediction 1 22 - -
Stsc272144g00003 395 MobiDBLite consensus disorder prediction 342 379 - -
Stsc272144g00003 395 ProSiteProfiles Zinc finger Dof-type profile. 56 110 IPR003851 GO:0003677|GO:0006355
Stsc272144g00003 395 ProSitePatterns Zinc finger Dof-type signature. 58 94 IPR003851 GO:0003677|GO:0006355
Stsc272144g00003 395 MobiDBLite consensus disorder prediction 101 133 - -
Stsc272144g00003 395 MobiDBLite consensus disorder prediction 30 48 - -
Stsc272144g00003 395 MobiDBLite consensus disorder prediction 1 48 - -
Stsc272144g00003 395 Pfam Dof domain, zinc finger 56 110 IPR003851 GO:0003677|GO:0006355
Stsc272144g00003 395 MobiDBLite consensus disorder prediction 286 314 - -
Stsc272144g00003 395 MobiDBLite consensus disorder prediction 342 363 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc272144g00003 Stsc-Chr272144 18899 20086 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc272144g00003 30 395 C2C2-Dof Transcription Factor Family AT5G65590 37.602 5.99e-58 190
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-Dof Stsc272144g00003 zf-Dof 8.4e-33 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc272144g00003 - - ahf:112747350 426.017