Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc272139g00012 ATGGGTGTTTCAGAAGCACAAACTCCAGCAGAGTCTCCACATCTGTATCCTCAGGAGCTTCAGCTGAAGCTGTATCAGGCATTCATTTTCTCCATTCCAGTACTCTTCTCCATAATTCTGGTTCTCCTATTCTACTTGTTCTACCTCAAAAGAAGAGCTTCCTCTCTATCTTCTCCTCCTCCTCTTCACTTTATTCCTACAACTCCCAATCCTCAAACTGCTCCCTACCCTTATCCTTCTTCTCCATACCGGTTAGATCTGACGGTGCAATTTCTGGAGAAACTTCCAAGAATTTTATTTGATGAGGAACTGAGAGCGAGGGACTCCGTATGCTGTGTATGTCTGGGAGAATTTGAGGTAAAAGAGGAGGTTGTAGAGATTCCATATTGCAAGCATGTGTTTCACATAGAATGCATACACAACTGGCTTCGATCAAACTCAACATGCCCACTATGTAGATGCTCCATCATCCCCACCACCACCACCAAGTTCATTCTCAACAATAATCCGAACCACCAACCTGCCTCACCATCACACCTCATCTTATCTTTGCCTCCACAACCACAACATCAACTCGCTGCTGCTTCCTCAATAAACACAACTTCATAA 609 0.4417 MGVSEAQTPAESPHLYPQELQLKLYQAFIFSIPVLFSIILVLLFYLFYLKRRASSLSSPPPLHFIPTTPNPQTAPYPYPSSPYRLDLTVQFLEKLPRILFDEELRARDSVCCVCLGEFEVKEEVVEIPYCKHVFHIECIHNWLRSNSTCPLCRCSIIPTTTTKFILNNNPNHQPASPSHLILSLPPQPQHQLAAASSINTTS 202
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc272139g00012 202 SUPERFAMILY RING/U-box 89 160 - -
Stsc272139g00012 202 ProSiteProfiles Zinc finger RING-type profile. 111 153 IPR001841 -
Stsc272139g00012 202 PANTHER E3 UBIQUITIN-PROTEIN LIGASE ATL42 22 173 - -
Stsc272139g00012 202 FunFam Putative E3 ubiquitin-protein ligase RHA4A isoform A 80 158 - -
Stsc272139g00012 202 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 82 158 IPR013083 -
Stsc272139g00012 202 Pfam Ring finger domain 111 153 IPR001841 -
Stsc272139g00012 202 SMART ring_2 111 152 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc272139g00012 Stsc-Chr272139 58626 60702 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc272139g00012 21 158 C3H Transcription Factor Family AT4G10150 40.559 4.84e-35 122
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc272139g00012 K19039 - pvu:PHAVU_002G300500g 236.113