Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc272139g00002 ATGCCTGTGCACTCTCTCACCCTACTACTTCTCTGTACCCTCTCATTCTCACTCTCCGTTGCTCTACCTTCCATCCACATGGCGGCGCCTTCTTCTTCTTCTTCTTGTTCCGTCGTCGTCACGCCATCCACTCCTCTTCTTTCCTTTCTCGAACTCCTCCAAGAAACGGCTCTCCAAACCTTCGGGGACTCCAACTTCGATCCCAAAACCTACGTCGACTTGCCCCTCAAGTTCACCCTCTCCGAGACACGCCAAGCATTCCACAACCTTCCAAGATCGACTTCCAACGGCACCGTTTCCGTGGAGGTGCTGAAAGGATTCCTCCATAACTACTTCGAGGGCGCAGGGGATGATCTGGTGCACTGGCAGCCACGTGATTTCGTCGCCGAGCCAGAAGGATTCTTGACGAAGGTGAAGCACCCGGAGGTGAGGGAGTGGGCTTTGAAGGTTCATTCTCTATGGAGAAACTTGAGCCGCAAGGTATCAAGCGAAGTTGAAAAGAATCCTCAGCTTCACACTCTGCTTCCCCTGCCGAACCCTCTTGTTATTCCTGGTTCACGCTTTCGTGAGGTCTATTACTGGGACTCTTATTGGGTCATTCGGGGGTTGCTGGTGAGTAAAATGCATAAGACTGCTACTGCTATTGTCATGAATCTTGTTTCTTTAATAGAAAAATATGGATTTGTTCTCAATGGGGCTAGACAGTACTACACTAACAGGAGTCAGCCTCCCCTTTTGAGTGCTATGATTTATGAGATATATCGCAGCACGGGTGACATTGAATTAGTTAAAAGATGTTTACCTGCACTGCTTAAAGAGCATGCGTTTTGGGATTCAGATATACACAGAGTGACCATTGTGGATGCTCAAGGTCACTCTCATAACTTGAATCGCTATCAGGCAATGTGGAACAAGCCCAGGCCAGAGTCGTCCACAATGGACAAAAAAGCTGCTTCAAAGTTCTTAAATATTTCAGAAAAACAGCATTTTTACCGAGATATAGCCTCAGCCGCTGAATCAGGATGGGATTTCAGCACAAGATGGATGAGAGACCCACCTGACTATAGTACACTAGCTACAACATCTGTAGTACCTGTTGATTTGAATGCATATCTTCTTGGGATGGAACTTAATATTGCCTTCTTTGCAAAAGCTATTGGAGACAGAACCACCGCGAAACACTTCACGGAACTTTCTGATGTTAGAAAGAAGGCAATAAATTCTGTTTTCTGGAGTGAAAACAAGAAGCAATGGCTCGATTACTGGCTCAACAATGGCACATGTGAGGTGACTCAAGTTTGGGAAGCTAAGCATCAAAACAAAAATGTATTTGCTTCCAACTTTGTTCCTTTGTGGATGGAGCCATTTTACTCAGATGGTTCGCTTGTGGGTAGTGTTGTTCATGCTCTCAAAACTTCTGGCCTGATTCGTGCTGCTGGAATTGCAACTTCTTTGACCAATTCAGGACAACAGTGGGACTTTCCAAATGGTTGGGCTCCACTTCAACACATGCTAGTGGAAGGGCTGGTAAAATCAGGGTCAAAAGAAGCAAGGTCATTGGCTGAAGAAATTGCCATCAAATGGATCAGAAGCAATTATGTTAGTTTCAAGAAAACGGGGGTAATGCATGAAAAGCTTGACGTGGAGAAGTGTGGAGAATACGGAGGCGGTGGTGAATATACACCCCAGACTGGATTTGGTTGGTCTAACGGGGTTGTGTTGGCATTGTTGGAGGAGTTTGGCTGGCCTCAAGATCTGAGTATAGATTGTTGA 1773 0.4597 MPVHSLTLLLLCTLSFSLSVALPSIHMAAPSSSSSCSVVVTPSTPLLSFLELLQETALQTFGDSNFDPKTYVDLPLKFTLSETRQAFHNLPRSTSNGTVSVEVLKGFLHNYFEGAGDDLVHWQPRDFVAEPEGFLTKVKHPEVREWALKVHSLWRNLSRKVSSEVEKNPQLHTLLPLPNPLVIPGSRFREVYYWDSYWVIRGLLVSKMHKTATAIVMNLVSLIEKYGFVLNGARQYYTNRSQPPLLSAMIYEIYRSTGDIELVKRCLPALLKEHAFWDSDIHRVTIVDAQGHSHNLNRYQAMWNKPRPESSTMDKKAASKFLNISEKQHFYRDIASAAESGWDFSTRWMRDPPDYSTLATTSVVPVDLNAYLLGMELNIAFFAKAIGDRTTAKHFTELSDVRKKAINSVFWSENKKQWLDYWLNNGTCEVTQVWEAKHQNKNVFASNFVPLWMEPFYSDGSLVGSVVHALKTSGLIRAAGIATSLTNSGQQWDFPNGWAPLQHMLVEGLVKSGSKEARSLAEEIAIKWIRSNYVSFKKTGVMHEKLDVEKCGEYGGGGEYTPQTGFGWSNGVVLALLEEFGWPQDLSIDC 590
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc272139g00002 590 PANTHER TREHALASE 30 587 IPR001661 GO:0004555|GO:0005991
Stsc272139g00002 590 Pfam Trehalase 65 581 IPR001661 GO:0004555|GO:0005991
Stsc272139g00002 590 Gene3D - 42 586 IPR012341 GO:0005975
Stsc272139g00002 590 ProSitePatterns Trehalase signature 2. 491 500 IPR018232 GO:0004555|GO:0005991
Stsc272139g00002 590 PRINTS Glycosyl hydrolase family 37 signature 564 577 IPR001661 GO:0004555|GO:0005991
Stsc272139g00002 590 PRINTS Glycosyl hydrolase family 37 signature 296 313 IPR001661 GO:0004555|GO:0005991
Stsc272139g00002 590 PRINTS Glycosyl hydrolase family 37 signature 331 348 IPR001661 GO:0004555|GO:0005991
Stsc272139g00002 590 PRINTS Glycosyl hydrolase family 37 signature 363 380 IPR001661 GO:0004555|GO:0005991
Stsc272139g00002 590 PRINTS Glycosyl hydrolase family 37 signature 406 422 IPR001661 GO:0004555|GO:0005991
Stsc272139g00002 590 PRINTS Glycosyl hydrolase family 37 signature 484 500 IPR001661 GO:0004555|GO:0005991
Stsc272139g00002 590 PRINTS Glycosyl hydrolase family 37 signature 226 244 IPR001661 GO:0004555|GO:0005991
Stsc272139g00002 590 SUPERFAMILY Six-hairpin glycosidases 62 583 IPR008928 GO:0005975
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc272139g00002 Stsc-Chr272139 8742 12179 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc272139g00002 31 590 Trehalose Biosynthesis Gene Families AT4G24040 58.615 0.0 668
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc272139g00002 K01194 - gmx:547539 862.833