Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc272138g00003 ATGTCTCCTGCTCCTGCTTATAGAGGCTGTGGCTTGAAGCGCGACTTCATCAGCGATGAAATAATAAGCCCTATATCATCAATGCAAGATCCTAATTCTTGCATAATCTTCTATTCATGTCCCAACCTATCCGACTTGGATGATACTCTTTCTTTGACTTCTTTCCCCTCCACCACCATCAAAGACCGTTTTACCCCCGAAGAGAAAAGAATCTTGGAAAACACTTCTTTCTTAAATTGGACTACCTCCTCTTCTTCTTCTTCTGAATTATTATTAGAAACCTCGTCACAAACTAAAAGGCTAAAAAGAACCACAAGCTTCCCAGTTTCTCTAGAAAACCTTTCAATAACCCCGCTCTACGCCTTCAACTACAATAAAAATAAAAATGGCAATCAAACCAATCACATCAGAGATCACATAAGAAGTTGTTCGCAGGTCTACCGTGCTGCTGAAGCAGTTGAAGAGGCGGCGCAAGAAATCATTAACTCCGAAGGCGGCTCCGCTGCCGAGGAGGAAGACGGCTGCGATGGAATGAGGCTTGTTCAACTGCTAATCTCTTGCGCCGAAGCCGTGGCGTGTCGCGACAAATCTCACGCTTCGATACTTCTATCAGATCTTAAGTCTAGCGCCTTGGTTTTCGGCTCTTCGTTCCAGCGAGTAGCCTCCTGCTACGTGCAGGGCTTGTCCGAGCGATTATCTTCGATTCAGCCGTGTCTTGGTCCGGTGCCGGCGACGCAACCTATGATGAACATAATGGACGCCGCGTCGGAGAAGATGGAAGAAGCTTTCAGGCTGGTGTATGAGATTTGTCCACATATTCGGTTCGGACATTTCGTGGCGAATTCCGCGATAGTGGAAGCCTTTGAGGGTGAGAGTTTCGTCCACGTGGTAGACCTCGGCATGAGCCTGGGCCTACCACATGGTCATCAATGGCGGGGCCTGATCCAGTCCCTGGCCAACCGCGCCGGAGCCCGCGTCCGCAGGCTCCGGATAACCGCGGTTGGCCTCTGTATTGGCAGGCTCCGCGTCATTGGTGATGAACTCTCAGTTTACGCGAATAACATGGGAATCAACTTTGAATTCTCCGTTGTGCAGAAGAATCTAGAGAATCTGAAGCCTGATGATGTGAAAAAGGAAGAGGATGAGGTTCTTGTGGTGAATAGCATCCTGCAGCTGCATTGTGTTGTTAAAGAAAGCCGTGGAGCATTGAACTCTGTGCTTCAGATGATTCACAGGCTTTCACCGAAGGTTTTGGTTATGGTGGAGCAGGATTCGAGTCACAACGGACCGTTTTTTCTTGGAAGGTTTATGGAATCATTGCACTACTACTCTGCAATATTTGATTCGCTTGATGTGATGCTGCCAAAGTATGATACGAAGAGGGCGAAGATGGAGCAGTTTTACTTTGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGGATGGTGGCTCAGGCAAAGCAGTGGCTTGTGA 1563 0.4434 MSPAPAYRGCGLKRDFISDEIISPISSMQDPNSCIIFYSCPNLSDLDDTLSLTSFPSTTIKDRFTPEEKRILENTSFLNWTTSSSSSSELLLETSSQTKRLKRTTSFPVSLENLSITPLYAFNYNKNKNGNQTNHIRDHIRSCSQVYRAAEAVEEAAQEIINSEGGSAAEEEDGCDGMRLVQLLISCAEAVACRDKSHASILLSDLKSSALVFGSSFQRVASCYVQGLSERLSSIQPCLGPVPATQPMMNIMDAASEKMEEAFRLVYEICPHIRFGHFVANSAIVEAFEGESFVHVVDLGMSLGLPHGHQWRGLIQSLANRAGARVRRLRITAVGLCIGRLRVIGDELSVYANNMGINFEFSVVQKNLENLKPDDVKKEEDEVLVVNSILQLHCVVKESRGALNSVLQMIHRLSPKVLVMVEQDSSHNGPFFLGRFMESLHYYSAIFDSLDVMLPKYDTKRAKMEQFYFXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGWWLRQSSGL 520
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc272138g00003 520 ProSiteProfiles GRAS family profile. 171 520 IPR005202 -
Stsc272138g00003 520 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 137 469 IPR005202 -
Stsc272138g00003 520 Pfam GRAS domain family 180 470 IPR005202 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc272138g00003 Stsc-Chr272138 22211 24061 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc272138g00003 177 451 GRAS Transcription Factor Family AT1G66350 35.842 8.88e-47 169
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GRAS Stsc272138g00003 GRAS 2.9e-77 CL0063
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc272138g00003 - - adu:107491113 692.189