Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc272137g00003 ATGGAAGATGACCACAAAGCCTGCATCACAAGTCTAACTTTGGGTCTCGGAATTGGAGGAGGGTATCTCCCAAAGAAGAAGCAGAACGTGACCATGATGATGATGAACAAGCCTAATAAGCCTGCGCTTTCGCTGGACCTAACATTTGAGGATGATGAGGCTTATCCAAAAGAAGCCATTGATGAAGAAGAAGAAGAAGAAGTAGGGTTATCCATGTCTTTGAATAAGAGAATCCGTGAAGAACATAATTATAGTAACAATAAGGAGTGCCGAAATGGAAAGAACAGAGATAGCAGCTATAATGATGGGAGTAATGATGATAACAATAATCATAATAATTATTGCAGCAGAAAGAAACTGAGACTCACAAAGGAGCAATCAGCTTTGCTTGAAGAAAATTTCAAACTTCATACCACCCTTAATCAAGCTCAGAAACAAGCACTTGCTAAGCAATTGAATTTAAAGCATAGACAGGTTGAAGTTTGGTTTCAGAATAGAAGAGCAAGGACAAAGCTGAAGCAAACAGAGGTGGATTGCGAGTTCTTGAAGAAATGCTGTGAGAGATTAACAGATGAGAATCTGAGGTTGAAGAAGGAATTGCAGGAGCTTCGTGCAATCAAAGTTGGAGCATCACCATCACCAACACCAACACAGCCATTGTACATTCAACTCTCCAAATCTGCAACCTTGACTATTTGTTCTTCTTGTGAGGAGTTATTCAAGAAAACCAAACAAGAAAATATGTAG 747 0.3936 MEDDHKACITSLTLGLGIGGGYLPKKKQNVTMMMMNKPNKPALSLDLTFEDDEAYPKEAIDEEEEEEVGLSMSLNKRIREEHNYSNNKECRNGKNRDSSYNDGSNDDNNNHNNYCSRKKLRLTKEQSALLEENFKLHTTLNQAQKQALAKQLNLKHRQVEVWFQNRRARTKLKQTEVDCEFLKKCCERLTDENLRLKKELQELRAIKVGASPSPTPTQPLYIQLSKSATLTICSSCEELFKKTKQENM 248
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc272137g00003 248 SMART halz 173 216 IPR003106 GO:0006355|GO:0043565
Stsc272137g00003 248 MobiDBLite consensus disorder prediction 97 111 - -
Stsc272137g00003 248 ProSitePatterns 'Homeobox' domain signature. 148 171 IPR017970 GO:0000981|GO:0006355
Stsc272137g00003 248 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN HAT14 12 243 - -
Stsc272137g00003 248 CDD homeodomain 117 174 IPR001356 GO:0003677
Stsc272137g00003 248 Gene3D - 110 178 - -
Stsc272137g00003 248 SUPERFAMILY Homeodomain-like 103 174 IPR009057 -
Stsc272137g00003 248 MobiDBLite consensus disorder prediction 83 114 - -
Stsc272137g00003 248 ProSiteProfiles 'Homeobox' domain profile. 113 173 IPR001356 GO:0003677
Stsc272137g00003 248 SMART HOX_1 115 177 IPR001356 GO:0003677
Stsc272137g00003 248 Pfam Homeobox associated leucine zipper 173 205 IPR003106 GO:0006355|GO:0043565
Stsc272137g00003 248 Pfam Homeodomain 117 171 IPR001356 GO:0003677
Stsc272137g00003 248 Coils Coil 172 206 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc272137g00003 Stsc-Chr272137 15685 17304 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc272137g00003 105 239 Homeobox Transcription Factor Family AT4G37790 67.407 2.93e-57 182
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Stsc272137g00003 Homeodomain 1.2e-15 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc272137g00003 K09338 - gmx:100778922 216.083