Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc272136g00004 ATGGAGTTTGAGCTTGAGAACCCCTTTGATGAGAACTACCATGACCTTCCCTTTGAAGCTGTCACCTCTCTTTTCCACATTGAATCCGACCACATCCCTCCCTCAACTTACTTCCACACTCTCAAGGCTACCAATTTCGATATCTCTCTTAGAAGACATCTCATTTCCTTCATATCACAGTTGTCCTGCACCTTTGATCCGGTTCTGCCTTACCTTGCTACCAACTACCTAGATCGCTATCTGGCCAGCCAAGCCATATTGCAACAAAAGCCATGGAGCAAAAAGCTTCTTGCAATCTCTTGCTTCTCTCTAGCTGCCAAGATGCTAAAGATAGAGTATTCTCTCACTGATGTTCAGGCTCTTGTGAATAATCATGGTGATGGTGGTGTCATATTTGAGGCACAAACAATTCAAAGAATGGAGGCTATTGTGTTGGGGACACTACAATGGCGCATGCGTTCCATCACACCATTCTCATTCATCCCTTTCTTCATCAACATGTTTGGCATCAATGACCCTGCATTCAACCAGGTCCTCAAAGATAGGGCCTCCCAGATCATATTGAAGTCACAAACAGAGATAAAGGTTTTAGAATTCAAGCCATCTGTAATTGCAGCATCAGCTCTACTGTCTGCTTCACATGAGCTGTTTCCCTTTCAGTATCCGTGCTTCTTCAGAGCAATATCTGATTCTTCATATGTAAATAAAGAAAGCATGATGCAGTGCTATAATGTGATGCAGGAGATAGGGAGAGAGGAGTACGAATCATCTGTGTTGAATGTGAATTCAAGTTCAGACAGAGACACACCGGTTAATGTATTGGATGAACATTTTCTGAGCATGGAAGAGAGTGAAAAAACCAACAACATTGCTCCTCCCACCACTTCCACCACACACAATAAGGACCTCATCAAGAGAAGATCATCAAAATTCACTGCCTATGCTAACAACAACAACAACCACTCCTTCCATTCTCACCATCAATGCTGA 990 0.4293 MEFELENPFDENYHDLPFEAVTSLFHIESDHIPPSTYFHTLKATNFDISLRRHLISFISQLSCTFDPVLPYLATNYLDRYLASQAILQQKPWSKKLLAISCFSLAAKMLKIEYSLTDVQALVNNHGDGGVIFEAQTIQRMEAIVLGTLQWRMRSITPFSFIPFFINMFGINDPAFNQVLKDRASQIILKSQTEIKVLEFKPSVIAASALLSASHELFPFQYPCFFRAISDSSYVNKESMMQCYNVMQEIGREEYESSVLNVNSSSDRDTPVNVLDEHFLSMEESEKTNNIAPPTTSTTHNKDLIKRRSSKFTAYANNNNNHSFHSHHQC 329
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc272136g00004 329 CDD CYCLIN_AtCycD-like_rpt2 155 246 - -
Stsc272136g00004 329 SUPERFAMILY Cyclin-like 137 251 IPR036915 -
Stsc272136g00004 329 SMART Cyclin_C_2 155 271 IPR004367 -
Stsc272136g00004 329 PANTHER CYCLINS 35 256 IPR039361 -
Stsc272136g00004 329 Pfam Cyclin, C-terminal domain 155 256 IPR004367 -
Stsc272136g00004 329 SUPERFAMILY Cyclin-like 18 152 IPR036915 -
Stsc272136g00004 329 Gene3D - 23 244 - -
Stsc272136g00004 329 FunFam D6-type cyclin 34 150 - -
Stsc272136g00004 329 Pfam Cyclin, N-terminal domain 21 152 IPR006671 -
Stsc272136g00004 329 SMART cyclin_7 52 146 IPR013763 -
Stsc272136g00004 329 FunFam D6-type cyclin 151 244 - -
Stsc272136g00004 329 Gene3D - 34 153 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc272136g00004 Stsc-Chr272136 31853 33998 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc272136g00004 1 295 Core Cell Cycle Gene Families AT4G03270 43.226 7.49e-72 223
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc272136g00004 K18812 - gmx:100799951 428.328