Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc272136g00001 ATGGCGAGAACCCGTTGCGTTGACAAAAGTGGAATGAAGAAAGGTGCTTGGACTTCCGAAGAAGATAGCAAGCTAATTGCTTATATTACTAGGTATGGTTCCTGGAATTGGCGACAACTCCCTAGGTTTGCAGGTTTGGCAAGGTGCGGAAAGAGTTGTAGACTGAGATGGCTGAATTATCTGAGACCCAATATCAAACGAGGGAATTACACTCAAGAAGAAGAAGAGATTATTGTCACAATGCACAAGAAGCTAGGCAACAAGTGGTCTGTGATTGCATCGAATCTACCGGGAAGAACAGATAACGATGTGAAGAACCATTGGCACTCCTCCCTCAGGAAACGCTCTCATCAGAGCAACGCCGCCGGCGCCGCCACCAACAACCCTAAACCAAACAATTGTGCTTCCAATAATACAGAAGAGAACAGCAGCAACCATACTAATAATAATAATAATAACTCTTCGTTTCAATTTTCTCCTCAGACCTCCTCTGACACTGTCTCTGGCCCTTTGTCCCCTCAATCCACAATCACAATCTCTAATCATAATAACGAAAATCATTCTAATAATTCGGACTTTGGTGACATCGATTTTCTGAATTATTATACACAGCCAGCAATTGAAAATCTCTGGTCAGAGACATTTCTAGCTGAAGTAGTAGAGAATCGGAACGGTGGTTTTGGTTTTGGTTCATGTGACGATGATTCATGGGAATTAATGTTGTTGTCTCCGGCGCAATCATCATCGTTATCAAGTGCAGATAACTTTACCTTTGCAGCAGAAACAACAAAGACAGGTTTTGATGATGATGAAGAGTTTTGGAGACAACAACAACAGTGTTCCGTGGATTTGTCTTATGTTCCAAACGAACTACTTATTACATCGTACGTGGACGAGTATTTTCCTCATGTGCCTGTGTACGATGATTTAGATCTGTGGTCTCAAAGCAATAATCATTTTGCATCATGA 969 0.4169 MARTRCVDKSGMKKGAWTSEEDSKLIAYITRYGSWNWRQLPRFAGLARCGKSCRLRWLNYLRPNIKRGNYTQEEEEIIVTMHKKLGNKWSVIASNLPGRTDNDVKNHWHSSLRKRSHQSNAAGAATNNPKPNNCASNNTEENSSNHTNNNNNNSSFQFSPQTSSDTVSGPLSPQSTITISNHNNENHSNNSDFGDIDFLNYYTQPAIENLWSETFLAEVVENRNGGFGFGSCDDDSWELMLLSPAQSSSLSSADNFTFAAETTKTGFDDDEEFWRQQQQCSVDLSYVPNELLITSYVDEYFPHVPVYDDLDLWSQSNNHFAS 322
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc272136g00001 322 SMART sant 13 63 IPR001005 -
Stsc272136g00001 322 SMART sant 66 114 IPR001005 -
Stsc272136g00001 322 SUPERFAMILY Homeodomain-like 11 108 IPR009057 -
Stsc272136g00001 322 CDD SANT 69 112 IPR001005 -
Stsc272136g00001 322 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 62 116 IPR017930 -
Stsc272136g00001 322 FunFam MYB-related transcription factor 13 66 - -
Stsc272136g00001 322 Gene3D - 69 155 - -
Stsc272136g00001 322 CDD SANT 16 61 IPR001005 -
Stsc272136g00001 322 MobiDBLite consensus disorder prediction 95 189 - -
Stsc272136g00001 322 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Stsc272136g00001 322 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Stsc272136g00001 322 Pfam Myb-like DNA-binding domain 67 110 IPR001005 -
Stsc272136g00001 322 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Stsc272136g00001 322 MobiDBLite consensus disorder prediction 115 189 - -
Stsc272136g00001 322 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 61 IPR017930 -
Stsc272136g00001 322 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 1 221 - -
Stsc272136g00001 322 Gene3D - 6 67 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc272136g00001 Stsc-Chr272136 9994 11837 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc272136g00001 1 119 MYB Transcription Factor Family AT1G06180 61.345 5.52e-53 172
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Stsc272136g00001 Myb_DNA-binding 2.7e-11 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc272136g00001 K09422 - gmx:100777107 236.498