Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc272135g00006 ATGGTGAATTTGCTGCATGGGAAGCTAGATGTGAGTATATATGAGATTGACAAGCTGCAAAATCCTACTCGATTCAACTTTAGTCCTTGCACCAAGGGCACAAGTTCAAACCTGGGGAAGAAATTTCTTACCCAACTCAAGAACATTTTTCTCTGCCAATGCCAACCAGAGATTCTTCCACTAGGTCTATATGCAACAGTTGATTTAGATAAAGCAAGGGTTGCAAGAACAAGAATGTTAGATGATCAACCAACAAATCCACACTGGAATGAGAAGTTTCACATATATTGTGCACACTTGATCTCACGCATTATATTCACTGTCAAACAAGATAACCCTGTTGGGGCAACCCTAATTGGAAGAGCTTATGTCCCAGTTGAACAAGTCATCAATGGTGACATTGTTGATACTTGGGCAGAAATACTTGATGAGCAGCATCATCCTATACCAGGTGGCTCCAAAATCCATGTTAGAATGCAATACTTTGATGTAAAGAATGATTCAAATTGGTCTCAAGGACTAAGGAGTCCACAGTTTCAAGGAGTTCCACACACCTTCTTCAACCAAAAATCTGGCTGCAAAGTTACTCTCTACCAAGATGCACATGTCCAGGACAACTTTTCGCCGCGGATCGAGTTGTCCGGAAGACAATACTATGAGCCTGCAAGATGCTGGAAAGATATCTACAATGCAATAATTGATGCTAAGCATTTCATTTACATAACTGGTTGGTCTGTTTACACTGAGATAAGTTTGGTTAGGGACCAAAGCCAAAGGAATTCAAGCATCACACTTGGTGAGCTTCTCAAGAAGAAAGCAAGTGAAGGTGTCAAGGTTCTAATGCTTGTTTGGGATGACAGAACTTCTGTTCCGGATTTCAAGAAAGATGGTTTGATGGCAACACATGATCAAGAAACAGAACAGTACTTTAAGGACACAGATGTGCATTGCATCTTGTGTCCACGGAATCCAGACGATGGAAGAAGCATTGTTCAAGGTTTCGAGATCTCAACAATGTTCACTCATCACCAAAAGAGTGTGATTCTTGATGGAAAAGTCGAGGGAGAATGGAAGAAGCGAACCGTTGTAAGCTTCATTGGTGGAATTGATCTCTGTGATGGAAGGTATGATACTCAGGAACATCCTTTGTTTTCCACTTTGAACACTGTCCACCATGATGATTTCCATCAGCCGAATTTCCCCGGTGCTTCCATAAGAAAAGGCGGTCCGAGGGAGCCGTGGCATGACATTCATTGCAAGCTAGAAGGCCCGGTGGCATGGGATGTTTTGTACAATTTTCAGCAGAGGTGGGAGAAGCAAGTTGGGAAGATGCTCCTATTCTCTTCTAGCATGCAAAATGATTTTCTTGTTCCTCAAGCTACCACGGCGAACACCAATGATCATGAGAGTTGGAATGTTCAAGTGTTTAGGTCCATTGATGGTGGTGCTGCTTCCGGATTCCCTGAAGATCCAGATGAAGCTTGTGAAAGAGGTCTTGTTAGTGGAAAAGATAACATCATTGATAGAAGCATTCAGGATGCATACATCAACGCAATTCGCCGTGCCAAGAATTTCATCTACATTGAGAATCAGTACTTCCTAGGGAGCTCATATGGTTGGAAATCATCTGATATAAAAGTTGAGGATATCAATGCTTTGCATCTTATCCCAAAAGAACTTTCTTTGAAGATTGTTAGCAAGATTGAAGCCGGGGAGAGGTTTTCCGTCTATGTTGTGATTCCCATGTGGCCGGAAGGAGTGCCTGAGAGTGGTTCAGTTCAAGCAATATTGGATTGGCAGAAGAGGACAATGGAGATGATGTATGCTGATATTGCTGAAGCCATTAGAAGGAAGGGAATTACAGCACATCCTAGGGACTACTTGACATTCTTCTGCCTTGGAAACTGCGAGGCGAGGCGAGCCGGGGAGTATTCTCCTCCTGAGAAGCCTGAACCTGGCAGTGATTATAGTAGAGCACAAAAGGCAAGGAGATTCATGATCTATGTTCATGCTAAGATGATGATAGTTGATGATGAATACATAATCATTGGTTCAGCAAACATAAACCAAAGATCAATGGATGGTGCAAGAGACAGTGAGATTGCAATGGGTGGATTNNNNNNNNNNCTAGCATCCAATAATAAGAAACCAAAGGGTCAAATCTATGGATTCAGGCTTTCATTATGGCATGAACATCTTGGTGACACAAATAACACAAGAATCTTGGAGAATCCAGAGAGTTTGGAATGCATCCAGCATGTGAACAATCTTGCTGACACAAATTGGGACATATATTCAAAGGAGAATTTTGATGAGAAAAGACCCTTTCACCACCTCTTGAAGTACCCTATTGAGGTATCCAACAATGGAACCATAACAACACTTGAAGGGTTTCAACATTTTCCTGATACCAATGCTAAGATTCTTGGTACCAAATCAGATTACCTTCCACCAATTCTCACCACCTAA 2469 0.418 MVNLLHGKLDVSIYEIDKLQNPTRFNFSPCTKGTSSNLGKKFLTQLKNIFLCQCQPEILPLGLYATVDLDKARVARTRMLDDQPTNPHWNEKFHIYCAHLISRIIFTVKQDNPVGATLIGRAYVPVEQVINGDIVDTWAEILDEQHHPIPGGSKIHVRMQYFDVKNDSNWSQGLRSPQFQGVPHTFFNQKSGCKVTLYQDAHVQDNFSPRIELSGRQYYEPARCWKDIYNAIIDAKHFIYITGWSVYTEISLVRDQSQRNSSITLGELLKKKASEGVKVLMLVWDDRTSVPDFKKDGLMATHDQETEQYFKDTDVHCILCPRNPDDGRSIVQGFEISTMFTHHQKSVILDGKVEGEWKKRTVVSFIGGIDLCDGRYDTQEHPLFSTLNTVHHDDFHQPNFPGASIRKGGPREPWHDIHCKLEGPVAWDVLYNFQQRWEKQVGKMLLFSSSMQNDFLVPQATTANTNDHESWNVQVFRSIDGGAASGFPEDPDEACERGLVSGKDNIIDRSIQDAYINAIRRAKNFIYIENQYFLGSSYGWKSSDIKVEDINALHLIPKELSLKIVSKIEAGERFSVYVVIPMWPEGVPESGSVQAILDWQKRTMEMMYADIAEAIRRKGITAHPRDYLTFFCLGNCEARRAGEYSPPEKPEPGSDYSRAQKARRFMIYVHAKMMIVDDEYIIIGSANINQRSMDGARDSEIAMGGXXXXLASNNKKPKGQIYGFRLSLWHEHLGDTNNTRILENPESLECIQHVNNLADTNWDIYSKENFDEKRPFHHLLKYPIEVSNNGTITTLEGFQHFPDTNAKILGTKSDYLPPILTT 822
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc272135g00006 822 FunFam Phospholipase D 482 709 - -
Stsc272135g00006 822 Gene3D C2 domain 6 173 IPR035892 -
Stsc272135g00006 822 SUPERFAMILY Phospholipase D/nuclease 167 447 - -
Stsc272135g00006 822 ProSiteProfiles Phospholipase D phosphodiesterase active site profile. 665 692 IPR001736 GO:0003824
Stsc272135g00006 822 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 5 164 IPR035892 -
Stsc272135g00006 822 Gene3D Endonuclease Chain A 210 469 - -
Stsc272135g00006 822 Pfam Phospholipase D C terminal 741 812 IPR024632 -
Stsc272135g00006 822 Gene3D Endonuclease Chain A 471 705 - -
Stsc272135g00006 822 CDD C2_plant_PLD 4 162 - -
Stsc272135g00006 822 SMART pld_4 338 375 IPR001736 GO:0003824
Stsc272135g00006 822 SMART pld_4 665 692 IPR001736 GO:0003824
Stsc272135g00006 822 ProSiteProfiles C2 domain profile. 1 139 IPR000008 -
Stsc272135g00006 822 Pfam Phospholipase D Active site motif 666 692 IPR001736 GO:0003824
Stsc272135g00006 822 Pfam Phospholipase D Active site motif 338 375 IPR001736 GO:0003824
Stsc272135g00006 822 SUPERFAMILY Phospholipase D/nuclease 511 703 - -
Stsc272135g00006 822 SMART C2_3c 8 138 IPR000008 -
Stsc272135g00006 822 PIRSF PLD_plant 1 822 IPR011402 GO:0004630|GO:0005509|GO:0016020|GO:0046470
Stsc272135g00006 822 PANTHER PHOSPHOLIPASE D 3 811 IPR015679 -
Stsc272135g00006 822 FunFam Phospholipase D delta 215 481 - -
Stsc272135g00006 822 ProSiteProfiles Phospholipase D phosphodiesterase active site profile. 338 375 IPR001736 GO:0003824
Stsc272135g00006 822 Pfam C2 domain 7 140 IPR000008 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc272135g00006 Stsc-Chr272135 33135 37424 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc272135g00006 3 822 Phospholipase D Gene Family (Wang group) AT3G15730 64.848 0.0 1112
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc272135g00006 K01115 - gmx:100791688 1297.34