Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc272135g00004 ATGATAGGAAACCAACATTCCCACCCAAAATGGAATGAAACATTTGAAATATACTGTGCTCACAACATCTCTGAAATCATCTTCACCGTTAAAGATGGCAACCCAATTGGTGCAACTCTCATTGGAAGAGCCTTCATTCACTCCCAAGAACTCCTCAAGGGCCGCACTCTTAGCAGATGGCTCGAGATTCTCGACGACGAAGACCGCCGTCCGGTCCACGGCGCTCGAATCCGTGTTACCTTACAATACTTTCATATAACGGAATATTCCACGGGGATAACGCCGTCGTTTAACGGTGTCCCCAGAACATTCTTTAACGAGAGACAAGGTTGCAAGGTTACATTGTACCAAGATGCTCATGTTCTTCATGGAGGACTGCCTTGGATTGCGGTATCCGGAGGGAAATACTATGAGCATGCTCGGTGTTGGGAAGATATTTATGATGCCATGATGAATGCCAAACATTTCATTTACATTACAGGCTGGTCTGTTTATACTGAGATTACGTTGGTCAGGGACAAAACGACAAGGCCTAATGTCGTAACGCTTGGGGAGATTCTTAAGGCGAAAGCGGAGGAGGGTGTTCGAGTTCTTATGCTTGTTTGGGACGATAGATCTTCCGTCCCGGAGTTCAAGAAAGATGGGTTGATGGCAACGCATGATCAAGAAACTGAACAATATTTTAGGAATACTAAAGTGAAATGTGTTTTGTGCCCGCGAAATCCTGATGATGGGAGAAGCATTGTCCAGGGATTTCAGATCTCGACAATGTTCACCCATCATCAGAAGAGTGTGGTTGTTGATGGCAATGTCGAAGGGAGTAGTAAAAGAGAGATCGTAGGTTTTATTGGTGGGATTGATCTTTGTGATGGGAGATATGATACTCAAGAGCATCCTTTGTTTTCAACTTTAAACACCGTCCACCATGATGACTTCCATCAACCGAATTTCCCTGGCGCTTCCATCAAGAAAGGCGGCCCGAGGGAGCCGTGGCATGATGTGCATTGCAAGTTAGAAGGACCGGTTGCTTGGGATGTGTTGTATAATTTTGAACAGAGGTGGGAGAAGCAAGTTGGGAAGAACAACATTAACAATCAGAACTTTTTATTCACACTTGATGAGCTTGATCAAATACTTGTGCATCCAAATGAGGCTGCTAGATTGGAAGATGATAGGGATTCTTGGAATGTTCAGTTGTTTAGGTCGATTGATGGCGGCGCGGTTTATGGATTCCCACAGAACCCTGAAGAAGCTGCTGAATTAGGCCTTGTCAGTGGCAAAGACAATGTAATTGATAGAAGCATTCAAGATGCATATATTCATGCAATTAGGCGTGCAAAGAATTTCGTCTACATTGAGAATCAGTACTTCATAGGGAGTTCATATGGTTGGAAATCATCTGATATAAAAGTTGCTGATATTAACGCCTTGCATCTTATACCAAAGGAGCTTTCACTCAAGATCTGTAAGAGCATTGAAGCAGGACTAAGGTTTGCTGTTTATGTTGTGATTCCGATGTGGCCCGAAGGTGTGCCTGAAAGTGGTTCAGTTCAGGCAATTTTGGATTGGCAAAGAAGGACAATGGAGATGATGTATAGTGACATTGCTGAATCCATAAGGAAGACAGGAATTGAAGCACATCCTAGAGATTATTTGACATTCTTTTGCCTTGGGAAGAGGGAGCCTAAGATGGAAGGAGAATATGTTCCTACAGAACAACCTGAACCTGATAGTGATTATAGAAGAGCACAGGATGCTAGAAGGTTCATGATCTATGTTCATTCCAAGATGATGATTGTGGATGATGAATACATCATAATTGGTTCAGCCAACATAAACCAAAGATCAATGGATGGGGGAAGAGACACAGAGATAGCAATGGGAGCATACCAACCACACCACATAGCGACACGTGTCCCGAAACCTAGGGGCCACGTGCACGCGTTTCGGAGAGCCCTATGGTACGAACACATGGGGGACCCACTAGCACTGGACGAGGTTTTCAACCGGCCAGAGAGTGAGGAGTGTGTGAAGCTTGTGAACCATCTTGCTGAGAGGAATTTGGAGTTGTACACAAAAGATGAGTTTGATGAGAACACAACACTTCATCACTTGTTGCAGTACCCTGTACACGTGGCAAGTGATGGATCCATAACAACGTTGTCTGGGTTTGAATGTTTTCCGGATGCCAAGGCTCATGTTCTTGGATCAAAATCTGAGTACCTTCCTCCAATACTCACCACCTAG 2247 0.4424 MIGNQHSHPKWNETFEIYCAHNISEIIFTVKDGNPIGATLIGRAFIHSQELLKGRTLSRWLEILDDEDRRPVHGARIRVTLQYFHITEYSTGITPSFNGVPRTFFNERQGCKVTLYQDAHVLHGGLPWIAVSGGKYYEHARCWEDIYDAMMNAKHFIYITGWSVYTEITLVRDKTTRPNVVTLGEILKAKAEEGVRVLMLVWDDRSSVPEFKKDGLMATHDQETEQYFRNTKVKCVLCPRNPDDGRSIVQGFQISTMFTHHQKSVVVDGNVEGSSKREIVGFIGGIDLCDGRYDTQEHPLFSTLNTVHHDDFHQPNFPGASIKKGGPREPWHDVHCKLEGPVAWDVLYNFEQRWEKQVGKNNINNQNFLFTLDELDQILVHPNEAARLEDDRDSWNVQLFRSIDGGAVYGFPQNPEEAAELGLVSGKDNVIDRSIQDAYIHAIRRAKNFVYIENQYFIGSSYGWKSSDIKVADINALHLIPKELSLKICKSIEAGLRFAVYVVIPMWPEGVPESGSVQAILDWQRRTMEMMYSDIAESIRKTGIEAHPRDYLTFFCLGKREPKMEGEYVPTEQPEPDSDYRRAQDARRFMIYVHSKMMIVDDEYIIIGSANINQRSMDGGRDTEIAMGAYQPHHIATRVPKPRGHVHAFRRALWYEHMGDPLALDEVFNRPESEECVKLVNHLAERNLELYTKDEFDENTTLHHLLQYPVHVASDGSITTLSGFECFPDAKAHVLGSKSEYLPPILTT 748
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc272135g00004 748 Gene3D Endonuclease Chain A 128 381 - -
Stsc272135g00004 748 FunFam Phospholipase D delta 133 372 - -
Stsc272135g00004 748 Pfam C2 domain 6 62 IPR000008 -
Stsc272135g00004 748 PIRSF PLD_plant 1 748 IPR011402 GO:0004630|GO:0005509|GO:0016020|GO:0046470
Stsc272135g00004 748 SUPERFAMILY Phospholipase D/nuclease 94 360 - -
Stsc272135g00004 748 Gene3D C2 domain 2 94 IPR035892 -
Stsc272135g00004 748 ProSiteProfiles Phospholipase D phosphodiesterase active site profile. 256 292 IPR001736 GO:0003824
Stsc272135g00004 748 PANTHER PHOSPHOLIPASE D 5 736 IPR015679 -
Stsc272135g00004 748 Pfam Phospholipase D C terminal 665 738 IPR024632 -
Stsc272135g00004 748 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 7 85 IPR035892 -
Stsc272135g00004 748 SMART pld_4 589 616 IPR001736 GO:0003824
Stsc272135g00004 748 SMART pld_4 256 292 IPR001736 GO:0003824
Stsc272135g00004 748 FunFam Phospholipase D 402 635 - -
Stsc272135g00004 748 ProSiteProfiles Phospholipase D phosphodiesterase active site profile. 589 616 IPR001736 GO:0003824
Stsc272135g00004 748 Pfam Phospholipase D Active site motif 590 616 IPR001736 GO:0003824
Stsc272135g00004 748 Pfam Phospholipase D Active site motif 256 292 IPR001736 GO:0003824
Stsc272135g00004 748 SUPERFAMILY Phospholipase D/nuclease 423 666 - -
Stsc272135g00004 748 ProSiteProfiles C2 domain profile. 1 61 IPR000008 -
Stsc272135g00004 748 Gene3D Endonuclease Chain A 405 638 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc272135g00004 Stsc-Chr272135 25539 28217 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc272135g00004 2 748 Phospholipase D Gene Family (Wang group) AT3G15730 64.644 0.0 1006
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc272135g00004 K01115 - gmx:100794115 1066.22