Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc272135g00003 ATGGTACAGCCAAAGAAGTTCAGAGGAGTGAGGCAGCGCCAGTGGGGCTCCTGGGTGTCAGAGATTCGCCACCCTCTCCTGAAGAGGAGGGTGTGGCTGGGAACATTTGAGACAGCAGAAGCAGCAGCAAGGGCTTATGATCAAGCAGCTATATTGATGAATGGCCAAAATGCAAAGACCAATTTCCCTTCAACAAAGAACAAACAACAATCTCATCATCATCATCACAACAACAATGCAACAATTGCTTCTTGCAATGATGATAATAACAATAATGAAGATGAAGATGATTCTTCTTTCTTGTCTCCCAAGGCACTCTCAGAGCTTCTCAGTGCAAAGCTTAAGAAGTGTTGTGGCAAGGACCCTTCTTCTCCTTCCCTCACATGTCTCCGGCTCGACGCCGACAATTCCCACATCGGAGTCTGGCAAAAGGGCCCCGGAAGACACTCTGATTCCAGTTGGGTCATGAGAGTTGAGCTTGGCAAGAAGAACCAACCACAACAGGAGGGTAATAAGGTCATTTTCCCATCTTCACAAAGTACTCCTAATAATAATAATAATAACAATAACAACAACAATCATGATAATAATAATAATGTTGTTGTTAGTGGTGAGAATGATGATGAAAATAGAATTGAAGAAGAGAACAGAGTTGCCATGCAGATGATTGAAGAGCTTCTTAATTGGAATAACTATCCATATGGTTCTTCTTCAACTAATAATTCTCAGCAACAACAAGAAAAATTAATTAATTAA 756 0.4127 MVQPKKFRGVRQRQWGSWVSEIRHPLLKRRVWLGTFETAEAAARAYDQAAILMNGQNAKTNFPSTKNKQQSHHHHHNNNATIASCNDDNNNNEDEDDSSFLSPKALSELLSAKLKKCCGKDPSSPSLTCLRLDADNSHIGVWQKGPGRHSDSSWVMRVELGKKNQPQQEGNKVIFPSSQSTPNNNNNNNNNNNHDNNNNVVVSGENDDENRIEEENRVAMQMIEELLNWNNYPYGSSSTNNSQQQQEKLIN 251
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc272135g00003 251 MobiDBLite consensus disorder prediction 164 205 - -
Stsc272135g00003 251 ProSiteProfiles AP2/ERF domain profile. 6 63 IPR001471 GO:0003700|GO:0006355
Stsc272135g00003 251 Gene3D AP2/ERF domain 5 64 IPR036955 GO:0003700|GO:0006355
Stsc272135g00003 251 SMART rav1_2 6 69 IPR001471 GO:0003700|GO:0006355
Stsc272135g00003 251 SUPERFAMILY DNA-binding domain 6 64 IPR016177 GO:0003677
Stsc272135g00003 251 PRINTS Ethylene responsive element binding protein signature 7 18 IPR001471 GO:0003700|GO:0006355
Stsc272135g00003 251 PRINTS Ethylene responsive element binding protein signature 29 45 IPR001471 GO:0003700|GO:0006355
Stsc272135g00003 251 MobiDBLite consensus disorder prediction 162 209 - -
Stsc272135g00003 251 PANTHER SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR 3 187 - -
Stsc272135g00003 251 MobiDBLite consensus disorder prediction 58 100 - -
Stsc272135g00003 251 FunFam Ethylene-responsive transcription factor 2 5 64 - -
Stsc272135g00003 251 CDD AP2 5 63 IPR001471 GO:0003700|GO:0006355
Stsc272135g00003 251 Pfam AP2 domain 6 55 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc272135g00003 Stsc-Chr272135 13196 14365 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc272135g00003 1 236 AP2-EREBP Transcription Factor Family AT5G25390 50.847 9.68e-68 206
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Stsc272135g00003 AP2 2.5e-12 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc272135g00003 - - lang:109326202 247.669