Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Stsc272134g00010 | ATGAACTCAGCATCTTCATCCAATGAACTCATCCGGGAGAATAATGGTGAGGCTGCTTGGTGCTGTGTATGCTTGTCGAGGTTAAAGGATGAAGACGAAATTCGAGTCCTTCCTTGCCTGCACAAGTTCCACAAGATTTGTGTGAATAGATGGCTCAAAGGTCGCCACAAAACCTGTCCCCTCTGCCGGTTCTCTATGGGAGGTGGCAGCGAGGAGAGATCGCACCACCACGCTGAGATTTTCACCGAAGAGATGTTGATATGGTTTTCTTCTTTCCATATAGCTGGTATGTAG | 294 | 0.4762 | MNSASSSNELIRENNGEAAWCCVCLSRLKDEDEIRVLPCLHKFHKICVNRWLKGRHKTCPLCRFSMGGGSEERSHHHAEIFTEEMLIWFSSFHIAGM | 97 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Stsc272134g00010 | 97 | PANTHER | TARGET OF ERK KINASE MPK-1 | 14 | 68 | - | - | |
| Stsc272134g00010 | 97 | Pfam | Ring finger domain | 21 | 63 | IPR001841 | - | |
| Stsc272134g00010 | 97 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 2 | 69 | IPR013083 | - | |
| Stsc272134g00010 | 97 | ProSiteProfiles | Zinc finger RING-type profile. | 21 | 63 | IPR001841 | - | |
| Stsc272134g00010 | 97 | SUPERFAMILY | RING/U-box | 15 | 66 | - | - | |
| Stsc272134g00010 | 97 | SMART | ring_2 | 21 | 62 | IPR001841 | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Stsc272134g00010 | Stsc-Chr272134 | 48655 | 51710 | Dispersed/Wgd |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Stsc272134g00010 | 15 | 74 | C3H Transcription Factor Family | AT1G80400 | 48.333 | 5.09e-15 | 67.0 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Stsc272134g00010 | - | - | gmx:100527665 | 152.14 |