Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc272132g00008 ATGTCAGACCCAAATTCAGTTGATGTGATTTTGGAATTTCTGAGGAGGAACCGATTCACCCGGGCCGAGGCAGCCTTGCGCAGTGAACTTGGTAACCGTTCTGATGTGAATGGGTTCCTTCAGAAGCTTAAATTGGAAGAAAAGGAATTGTGTGATGTCTCGCATGAGGATAAAGGGACGCCAGTGCTAGAAAACCGCGGGTCAGATTCTCGTGATAGTGTTGATGGTTCTAAAGAGCTGATTGTGAAGGAAATAGAGTATGGAACTAGTCGAAATAATGTTGAAAGCAAACGGAAAGCTTCTGCTTCTACGGGGGAGCGTAATCAGTCGAACGAAGCGGGTGGGACAAGTGATAAAAACTTCAGTTTCTCAAAGGGGTCGGAGGACAATCTACTTGATTTGAACTCATGGAAGTTCGGCCCTGGAAATGGTCCTGTGGAGCCTTACCAAACTTATGGTGGAAGTGGGGCTAGTAATGTGTTGAAGACCCCAATGTCTCAGCAATCAAAATCTCAAACAAGTGAAGTTATTGATTCAGCCAACAGAAAAGCGAAATCCGGGGAGGAAAATGCTGTGCCTACTGAAAGAAATTCCACTTGGCTTGGAAGTAGTAGTAAAGCCACTGCTGAGCCTAAGTATGAGCTTATTCAAAGCAAAGAACCTAGGGAACTGGATCGACAACTAAAATTTAGTAGTTCTTCTCTGAAAGAGAACTTGGTCGATAATACTTTGTTGAGAAATGATGAGAATGTGAATTTGTCATTGGACCCGTGGAAAGATTGTTCTGTCAAGACTGTTTTCCCGTTCTCAACGGGAACGGGGGATGTGTCTACGAGCTATAATGGTTCAACTTATTTAGGCAGAAAAGAGGAGAAGAGAAAGGAAGAAACAAGTGATGCTAGATCAGCCATAAAAGAGCAGGTGGATGAAGTGGGGAGGGCTTTGTACTTAGGAAAGTTACAAGGCAATTCCGAACAGAATAACTTCGGCAGCCTAAGTTTCCCTCTCACACCAGAGAACCAGAAGGAAGAATTTCCTCGGCTTCCTCCTGTTAGAATCAAGTCAGAAGATAAGCAGTTGGCTGTTAATTGGGAGGAGAAGTTTGAGCGTGATGGACTGTCAGCGAAACTCAGTGGAACTGACAACACTTTGCTTATTGGGTCATATTTGGATGTGCCCATTGGACAAGAAATTAAAACTGCAGGTATGAGGAGGCCTGCAGGGGGTAGTTGGCTGTCTGTGAGTCAAGGGATTGTTGAGGATACTGATCTTGTATCTGGCTTTGCAACAATTGGCGATGGCTTGAGTGAATCTATTGACTATCCAAATGAATATTGGGACTCTGATGAATATGACGACGACGATGATGTCGGGTACGTGAGACAACCCATCGAGGATGAGGCCTGGTTTTTGGCCCATGAAATTGATTATCCTAGTGACAATGAAAAGGGGACAACGCATGGAAGTGTTCCAGATCCTCAGGAAAGAGGCCCGGCCAAAGATGATGATGATGATCAGTCTTTTGCTGAGGAGGATTCTTATTTCTCTGGAGAGCAATATCTTCATGCAAAGAATGCCGAGCCAGTCACTGCTTCGGATGATCCCATTGGTCTTACAGTTACTGAAATGTATGGAGGAATGAATGATATTGATTCAATGGGTCAATACAATGGACAATTGATTGATGATGAAGAATTGAATCTGATGCGAGTGGAACCTGTATGGCAGGGGTTTGTCTCCCAGGCAAATGATCGCACGATGCTAGGAAATGGGAAGCTTTTAAATGACAGTGGAAGATCACGACTTGAAGATATCTCTATGGAAGATGATCAGCATGGTTCGGTTAGGTCAATTGGAGTGGGGATTAACAGTGATGCTGCTGACTTTGGCAGTGAAGTGCATGGAAGTTTGATTGGGGGCAGTAGCGAAGGGGATTTAGAATATTTCCGTGATCGTGATGTTGGGCTTGGTGGCTCCAGACACACTCATGATTTGGATAGCAATTCGAACAAATCGATCAAAAGCAAGAAGAGAAGTGACAAGAGTGAGTCGAATAAATACATCATTGGGGGTGATAAAGATGCATTACACAAAAAAACAAATAATGATGTGAACTTCTCATTCCCCCAAACTTTAAATGATGGCCAGATAATTCAAGCTGGTCCTAGTAAGGCTCTATGGTCAAATAGTTGTAATGTGGACGAAAGAGATGACCGTCTTAATGCATATGTGGGAACCGATGACATGCTTTCTTCTTGGAGGCGAAAGAGCAGTGATTCTTCTCCCGTTAAAAGTTCTAGGGATGATAATAATGCTAATATGGTAAGGTCAACAAACTCTTCTCCGACCACAGTATCAAATTATGGGTATACTGAAACAGGTCATGCCAAGCTAGAAGAGGATGAAAAAGGTGGCACTGAAAGGGAAGATGAACTAGGCGCTTCACTAGACGATGAAGAAGCTGCTGCTGTGCAAGAGCAGGTAAGGCAAATAAAAGCCCAGGAGGAGGAGTTTGAAACTTTCAATCTGAAGATTGTGCACAGGAAAAACAGAACTGGCTTTGAGGAAGACAAGCATTTCCATGTTGTTTTGAATTCTGTAATAGCTGGCCGTTATCATGTCACCGAGTATCTGGGATCTGCTGCATTTAGCAAAGCCATACAAGCACATGACCTGCACACGGGCATGGATGTTTGTGTTAAAATTATAAAAAACAACAAGGACTTCTTTGACCAAAGCCTTGATGAAATCAAGCTTCTGAAGTATGTCAATAAGCACGATCCTGCTGACAAGTATCACCTTCTGCGATTATATGATTATTTCTATTATAGAGAACATTTGTTAATTGTATGTGAGCTACTTAAAGCCAATTTGTACGAGTTTCATAAATTCAACAGAGAATCAGGGGGGGAAGTCTACTTCACAATGCCTAGATTACAGTCAATTACCATTCAGTGTTTGGAAGCACTTCAGTTTTTGCACAGCCTTGGACTAATACATTGCGATCTAAAGCCGGAGAACATTTTGGTTAAAAGCTATAGCAGATGCGAGGTGAAGGTCATTGATCTTGGAAGTAGTTGTTTTGAGACGGATCACCTTTGCTCCTATGTCCAGTCCAGGTCTTATCGTGCACCTGAGGTCATTTTGGGACTTTCATATGACAAGAAGATTGATATTTGGTCACTTGGATGCATCTTGGCAGAACTTTGCACTGGCAATGTTCTTTTCCAAAATGATTCCCCTGCAACATTACTCGCCCGGGTGATTGGGATCATTGGTCCAATTGATCAAAGTATGCTTGCAAAGGGACGAGATACATACAAGTACTTCACCAAAAATCATATGCTTTATGAACGGAATCAGGAATCCAACAAGTTAGAATACCTGATCCCAAAAAAGACATCATTGAGGCATAGATTGCCGATGGGAGACCAAGGTTTCATTGACTTCGTTGCTCATTTGCTCGAGGTTAACCCAAAGAAGCGGCCCTCTGCGGCTGAGGCCTTGAAGCACCCTTGGTTATCATACCCGTATGAACCCATATCATCTTGA 3552 0.4299 MSDPNSVDVILEFLRRNRFTRAEAALRSELGNRSDVNGFLQKLKLEEKELCDVSHEDKGTPVLENRGSDSRDSVDGSKELIVKEIEYGTSRNNVESKRKASASTGERNQSNEAGGTSDKNFSFSKGSEDNLLDLNSWKFGPGNGPVEPYQTYGGSGASNVLKTPMSQQSKSQTSEVIDSANRKAKSGEENAVPTERNSTWLGSSSKATAEPKYELIQSKEPRELDRQLKFSSSSLKENLVDNTLLRNDENVNLSLDPWKDCSVKTVFPFSTGTGDVSTSYNGSTYLGRKEEKRKEETSDARSAIKEQVDEVGRALYLGKLQGNSEQNNFGSLSFPLTPENQKEEFPRLPPVRIKSEDKQLAVNWEEKFERDGLSAKLSGTDNTLLIGSYLDVPIGQEIKTAGMRRPAGGSWLSVSQGIVEDTDLVSGFATIGDGLSESIDYPNEYWDSDEYDDDDDVGYVRQPIEDEAWFLAHEIDYPSDNEKGTTHGSVPDPQERGPAKDDDDDQSFAEEDSYFSGEQYLHAKNAEPVTASDDPIGLTVTEMYGGMNDIDSMGQYNGQLIDDEELNLMRVEPVWQGFVSQANDRTMLGNGKLLNDSGRSRLEDISMEDDQHGSVRSIGVGINSDAADFGSEVHGSLIGGSSEGDLEYFRDRDVGLGGSRHTHDLDSNSNKSIKSKKRSDKSESNKYIIGGDKDALHKKTNNDVNFSFPQTLNDGQIIQAGPSKALWSNSCNVDERDDRLNAYVGTDDMLSSWRRKSSDSSPVKSSRDDNNANMVRSTNSSPTTVSNYGYTETGHAKLEEDEKGGTEREDELGASLDDEEAAAVQEQVRQIKAQEEEFETFNLKIVHRKNRTGFEEDKHFHVVLNSVIAGRYHVTEYLGSAAFSKAIQAHDLHTGMDVCVKIIKNNKDFFDQSLDEIKLLKYVNKHDPADKYHLLRLYDYFYYREHLLIVCELLKANLYEFHKFNRESGGEVYFTMPRLQSITIQCLEALQFLHSLGLIHCDLKPENILVKSYSRCEVKVIDLGSSCFETDHLCSYVQSRSYRAPEVILGLSYDKKIDIWSLGCILAELCTGNVLFQNDSPATLLARVIGIIGPIDQSMLAKGRDTYKYFTKNHMLYERNQESNKLEYLIPKKTSLRHRLPMGDQGFIDFVAHLLEVNPKKRPSAAEALKHPWLSYPYEPISS 1183
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc272132g00008 1183 SUPERFAMILY Protein kinase-like (PK-like) 859 1176 IPR011009 -
Stsc272132g00008 1183 ProSiteProfiles Protein kinase domain profile. 872 1174 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc272132g00008 1183 FunFam Serine/threonine-protein kinase ppk15 951 1175 - -
Stsc272132g00008 1183 MobiDBLite consensus disorder prediction 755 791 - -
Stsc272132g00008 1183 MobiDBLite consensus disorder prediction 94 131 - -
Stsc272132g00008 1183 SMART serkin_6 872 1174 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc272132g00008 1183 PANTHER DUAL SPECIFICITY PROTEIN KINASE 655 1174 - -
Stsc272132g00008 1183 MobiDBLite consensus disorder prediction 752 817 - -
Stsc272132g00008 1183 MobiDBLite consensus disorder prediction 794 811 - -
Stsc272132g00008 1183 Coils Coil 824 844 - -
Stsc272132g00008 1183 FunFam Putative serine/threonine-protein kinase dyrk2 866 953 - -
Stsc272132g00008 1183 MobiDBLite consensus disorder prediction 50 220 - -
Stsc272132g00008 1183 ProSitePatterns Serine/Threonine protein kinases active-site signature. 998 1010 IPR008271 GO:0004672|GO:0006468
Stsc272132g00008 1183 Gene3D Phosphorylase Kinase; domain 1 866 953 - -
Stsc272132g00008 1183 Gene3D Transferase(Phosphotransferase) domain 1 926 1174 - -
Stsc272132g00008 1183 Pfam Protein kinase domain 872 1174 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc272132g00008 1183 CDD PKc_DYRK_like 872 1174 - -
Stsc272132g00008 1183 MobiDBLite consensus disorder prediction 152 180 - -
Stsc272132g00008 1183 MobiDBLite consensus disorder prediction 658 686 - -
Stsc272132g00008 1183 MobiDBLite consensus disorder prediction 191 206 - -
Stsc272132g00008 1183 MobiDBLite consensus disorder prediction 50 93 - -
Stsc272132g00008 1183 MobiDBLite consensus disorder prediction 478 509 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc272132g00008 Stsc-Chr272132 39844 46239 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc272132g00008 871 1169 MAP Kinase Gene Family AT5G19010 30.721 1.40e-29 123
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_DYRK-PRP4 Stsc272132g00008 Pkinase 8.5e-51 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc272132g00008 - - gmx:100798608 1823.91