Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc272126g00006 ATGGCCATCGAAATCTGGGGTTTCAACAGCATCGTTAACTGCTTCTTGATAGGTCTAGCTTTTCCAAGGGAAGGCAAATCTGCCAGAACGCTTCTCCATAAACTTGGCTACTCAATTTATAATTTTGTCCTCCCAGTTTACTTCGGATACTTAGGGTTACAGTGTGACGTCATCAATGCTTTCTGGAACCTGAATCGGTTGGCGAATGTCTCGATCTTGGTGTTGTTAGGGATCGGTAGCAAACTCAGTGGCACTCTTCTTGTGTGCCGTTACCTTCAGTATCCAACCAGTGAAGGAATCTTCCTTGGGTTTGTGTTGAACACAAGAGGCTATGCTGACCTTCTGTTCATTGGTGCTTCTGCAAAGCAAGTTATTACTTTTGATCCAGAAGCTTACAATGTGTTGTTAGTATCAATAGTACTCAACACAGTCATATCAGGAATAACTGTGGCTTTTCTATCAAGAGGGGAAGAGAGATTGTTTGTAGCAAACCATACTGCATTGGAGCCACAGCAATTGGAAGACGAGCTTCGAATCCTGGCTTGTGTATACGATCCTCGCCAAGTAGCTGCAGTACTGTCCACGGTTCTAGCATTACATGGCAATAAGCAAACACCATCAACCACCTATTTGATGCATTTGATAGAGCTTGTTAAGAAGATCAAGACTAATTTGTTGTTTCATGAAAAGGAAACCGCTGAGATTAGCGACGACGAAGACTATGGAGGCAACGATGTGGTGGATATTAACAATGCATTAGATGCTTTCACTGCAGACACAAAGGTTTTGGTACACCAGAGAAGGGCAGTGTCTTCTTTCACAACTCTTTATGAAGATGTTTGCAATGATGCAGAAGATCTTCAGGTATCAATCATTATACTTCCCTTTCACAAGCACCAGCGAATTGATGGAAAATTGGAGAGTGGAAAAGAAGGGATAAGGATTACAAACCAGAAAGTTATAAGGCATGCTCCTTGTTCTGTAGGCGTGATTATAGAAAGAGGACTTGAGAGTTCCCCTGGTTTCTCAAATCTAATTTCGTCTGATGAAGTACAAAATGTCGCGACGCTTTTCTTTGGCGGCGCAGACGACCGTGAGGCGATTGCTTGGAGCTTAAGAATCTCCAAGCATTCGAAGATCAACCTGACTATAATTAGATTCTTGCTGGCCTCTTCTGCGGTACAAAATGAACAAATCAAAAGTGGACAATCCGATGACAAAGAGATTATGATGTCGTTGACCGGAGAAGAGACTGTGAATGAGATTGATAACACCTTCATGGTTGATTTCTATAATAGGTATGTGACTTCAGGCCAAATTGGATATGTGGAGAAGTTTGTAAATGATGGAGCTGAAACACTAGAATGTTTAAAAGAGATTGGGGATCTATATGCTATGTTCATAGTAGGAAGGGGTGGTAGAGGACAATGTTCATTAACAATTGGTATGAGTGATTGGGAAGAGTGTCCTGAACTTGGTATAGTTGGTGATATTTTGGCTTCTTCAGATTTTGATATTCAAGGCTCTGTTTTAGTGATTCAACAACACAGAGATGCCAAGAAAGGCCTAATAAGTGATTAG 1581 0.4143 MAIEIWGFNSIVNCFLIGLAFPREGKSARTLLHKLGYSIYNFVLPVYFGYLGLQCDVINAFWNLNRLANVSILVLLGIGSKLSGTLLVCRYLQYPTSEGIFLGFVLNTRGYADLLFIGASAKQVITFDPEAYNVLLVSIVLNTVISGITVAFLSRGEERLFVANHTALEPQQLEDELRILACVYDPRQVAAVLSTVLALHGNKQTPSTTYLMHLIELVKKIKTNLLFHEKETAEISDDEDYGGNDVVDINNALDAFTADTKVLVHQRRAVSSFTTLYEDVCNDAEDLQVSIIILPFHKHQRIDGKLESGKEGIRITNQKVIRHAPCSVGVIIERGLESSPGFSNLISSDEVQNVATLFFGGADDREAIAWSLRISKHSKINLTIIRFLLASSAVQNEQIKSGQSDDKEIMMSLTGEETVNEIDNTFMVDFYNRYVTSGQIGYVEKFVNDGAETLECLKEIGDLYAMFIVGRGGRGQCSLTIGMSDWEECPELGIVGDILASSDFDIQGSVLVIQQHRDAKKGLISD 526
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc272126g00006 526 Gene3D - 1 160 IPR038770 -
Stsc272126g00006 526 PANTHER CATION/H + ANTIPORTER 3 517 - -
Stsc272126g00006 526 Pfam Sodium/hydrogen exchanger family 3 153 IPR006153 GO:0006812|GO:0015297|GO:0016020|GO:0055085|GO:1902600
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc272126g00006 Stsc-Chr272126 54991 58469 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc272126g00006 9 526 Antiporter Super Family AT1G16380 41.825 2.48e-143 430
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc272126g00006 K26731 - gmx:100804522 858.981