Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc272125g00001 ATGGATCTTGGGGCGGTGGGTTTGGATGGGTTGGTGGGTGGTTCTATTGGATGTTCAGATCCTGAGACAAAGCACAAGTGGTACGGATCTGGGTTGTTGAAGCAGGAGAGATCTGGTGGTGGTGACAACACCAACAACGAAGATGATGATGATGAATACTGGAGGAGCAACAAACTGCCAAAGACTGAGAGGAACTCATCATCAACCTTTCTGAGATCCAATAATGCAACTCTCTTCTCTGATGTTGCTGCTGCTGCCAACCACCACAACCAACAGCAACAAATGCTAAGTTTCTCTTCCCCAAAGTCAGACACTACTAACTGCCCCAATCCCACATTCCCATATCACTACCTCCCCTTATCAACTTCCAACAGAAATAATACAGGATGGGGAAGCAATAACATGCATGGGAATGGGAATGGGATTGGGATTGGGATTAGAGGGGCATTCACCCCATCACAGTGGATGGAGCTAGAACAGCAGGCCCTGATCTACAAGTATATAACAGCAAATGTGCCAGTCCCATCTCATCTGCTGATTCCAATAAAGAAAGCCCTTCATTCTGCTGGCTTCTCACACCTGTTCAGGCCCAGTGCAGTGGGATGGGCTGGGTTCCATCTTGGTTTCTCAAACAGCACCGATCCAGAGCCAGGCAGGTGCAGGAGAACAGATGGCAAGAAATGGCGTTGCTCCAGAGATGCCGTTGTTGACCAGAAGTACTGTGAGCGGCACATGAACAGAGGACGCCATCGTTCAAGAAAGCCTGTGGAAGGCCACAATGGCCATGCCCCCTCCCCCTCCCCCTCCCCCGCCGGGACAACCACCACCACCACTACCACCACTAATAATGCTTCTTCAAAGCTTATCCATGGTTCTCCCTCCCTGGTGGTTCCCGGAAACACTCCTCCTTCCAACACCCTCACCTTTGCACAACATGATCCAAAGAATATGCACCCTCTTGCATCATCTGATTCTTCACCTCCCAATAACATCAGCAGGATGTTTATGAATAATGATAAGGAGAGTAATGGCAGAGAGAGAATCCCAGAAGCTCAAGATGCACTTCCAATGCTGCCACCAACACTTGAACTGAAACCAAAGGAAAACCCCTTCCTCATTCACAAGCACCAAATCCCATCATACCAACAACAATCTGCCAGGAATGAGTTTGGCCTTGTCACTTCTGATTCCTTACTTAACCCTTCCCACAAGACCATCACAAGGGAAACTGATTCCCATCATTCCCTCAGGCATTTCATCGACGATTGGCCGAAGACCGAGACCGACCGCTCCGCCTTATCGTCGTGGCCGGAGTCGGAGAGGACGGAGCTCTCCATTTCCATCTCCAATGACTTCATGTCCTCAACCTCCTCTCCCACCAATGACAAGGTGACTCTGTCACCCCTGCGTCTGTCAAGGGAATTAGACCCGATTCAAATGGGTTTGGGAGTGGGAAACAATTCTCTAAGTGATTCATCAAACTCATCAAGGCAAGCTAACTGGATTCCAATCACTTGGGAGAGTTCAATGGGTGGTCCTCTTGGAGAAGTTCTTAATCTCAGCACTACTAACAACAACAACAACAACAACCACCACCACAGTTTAAGTGATGATCAATGTGGTGGCAAGAACAACAATTCGTCTTCAGCACTTAACCTGATGAGTGATGGGTGGGATAATAGCCCTCCATTAGGGTCTTCTCCAACTGGGGTTTTGCAGAAGACAGCCTTTGGATCTTTATCAAATAGCAGTGCAGGGAGCAGCCCAAGGGCAGAGAATAATAAAACTCAAGAAGGTGCAAGTTTGTGCAATGATCTTCTAATGCCTGCATTGTAA 1836 0.4837 MDLGAVGLDGLVGGSIGCSDPETKHKWYGSGLLKQERSGGGDNTNNEDDDDEYWRSNKLPKTERNSSSTFLRSNNATLFSDVAAAANHHNQQQQMLSFSSPKSDTTNCPNPTFPYHYLPLSTSNRNNTGWGSNNMHGNGNGIGIGIRGAFTPSQWMELEQQALIYKYITANVPVPSHLLIPIKKALHSAGFSHLFRPSAVGWAGFHLGFSNSTDPEPGRCRRTDGKKWRCSRDAVVDQKYCERHMNRGRHRSRKPVEGHNGHAPSPSPSPAGTTTTTTTTTNNASSKLIHGSPSLVVPGNTPPSNTLTFAQHDPKNMHPLASSDSSPPNNISRMFMNNDKESNGRERIPEAQDALPMLPPTLELKPKENPFLIHKHQIPSYQQQSARNEFGLVTSDSLLNPSHKTITRETDSHHSLRHFIDDWPKTETDRSALSSWPESERTELSISISNDFMSSTSSPTNDKVTLSPLRLSRELDPIQMGLGVGNNSLSDSSNSSRQANWIPITWESSMGGPLGEVLNLSTTNNNNNNNHHHSLSDDQCGGKNNNSSSALNLMSDGWDNSPPLGSSPTGVLQKTAFGSLSNSSAGSSPRAENNKTQEGASLCNDLLMPAL 611
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc272125g00001 611 MobiDBLite consensus disorder prediction 515 601 - -
Stsc272125g00001 611 MobiDBLite consensus disorder prediction 297 338 - -
Stsc272125g00001 611 MobiDBLite consensus disorder prediction 241 345 - -
Stsc272125g00001 611 Pfam QLQ 149 182 IPR014978 GO:0005524|GO:0005634|GO:0006355
Stsc272125g00001 611 MobiDBLite consensus disorder prediction 32 70 - -
Stsc272125g00001 611 ProSiteProfiles WRC domain profile. 214 258 IPR014977 -
Stsc272125g00001 611 Pfam WRC 215 257 IPR014977 -
Stsc272125g00001 611 ProSiteProfiles QLQ domain profile. 149 184 IPR014978 GO:0005524|GO:0005634|GO:0006355
Stsc272125g00001 611 MobiDBLite consensus disorder prediction 266 290 - -
Stsc272125g00001 611 PANTHER GROWTH-REGULATING FACTOR 5 89 453 IPR031137 GO:0005634|GO:0006351|GO:0032502
Stsc272125g00001 611 SMART QLQ_2 148 184 IPR014978 GO:0005524|GO:0005634|GO:0006355
Stsc272125g00001 611 MobiDBLite consensus disorder prediction 515 611 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc272125g00001 Stsc-Chr272125 2606 5457 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc272125g00001 1 578 GRF Transcription Factor Family AT2G22840 38.386 2.56e-87 280
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GRF Stsc272125g00001 WRC 5.7e-21 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc272125g00001 - - aprc:113865097 650.973