Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc272120g00006 ATGGTGTCGGTGAATCCGAACCCAGCTCAAGGATTTTACTTCTTCGATCCTTCTTCGTCGAATATGGGACTTCCCGGCGTTAATCCGATGCCGCCGCCGCCTCCGCCGACGCAGCATGCTCCGGCAGCCGTACCGTCAGCTGTGTCGTCCGCCGTTAACGCGGCGGAGGATCCGAATAAGAAGATCAGGAAACCCTACACGATTACTAAGTCTAGGGAGAGCTGGACAGAGCAGGAGCATGACAAGTTTCTAGAAGCTCTTCAATTATTTGATCGCGATTGGAAGAAGATTGAAGCATTTGTTGGCTCAAAAACTGTTATCCAGATACGGAGTCATGCACAAAAATATTTCCTTAAAGTCCAGAAGAATGGGACAAGTGAACATGTACCTCCGCCTCGGCCAAAGAGAAAAGCTGCCCATCCATACCCTCAAAAAGCTCCAAAGAGTGCTCCTACTGCATCCCATGTCACCGGGCCATTGCAATCTTCCTCAGCTTTCATTGAACCTGCATACATTTATAGCCAAGATTCATCATCTGTGCTAGGAACTCCAGTTACCAGTGTGCCTTTATCATCTTGGAATTATAACACCATGCCACCAAGCAATGTGCAACCAGCGACTAAAGATGATATTGGATTGGCTGGAGCTGGACAACCTGCCCCTATCACTTGTTGCTATAGCAGCAGTAATGAGAACACCCCTCCAACTTGGCCAAGTAACAACGGGTTTGAACAAAGAAACCAAGCCAAGGCAATTAAAGTTATGCCTGATTTTGCACAAGTCTACAGCTTCATTGGCAGTGTATTTGATCCAAATTCAACTAATCATCTCCACAGGCTGAAACAGATGGACCCAATAAATATGGAAACGGTACTATTATTGATGAGAAACCTCTCCATGAATCTAATGAGTCCTGAATTTGAGGATCATAAGAGGCTGCTTTCGTCATACGGAGCTAACTCCGAGGAGGCAAAGTTTGTCAATCCTTGCAGCAACTCCCTCAAATCTGAGAGTGCTGTTCTAACTGCTTAG 1032 0.4632 MVSVNPNPAQGFYFFDPSSSNMGLPGVNPMPPPPPPTQHAPAAVPSAVSSAVNAAEDPNKKIRKPYTITKSRESWTEQEHDKFLEALQLFDRDWKKIEAFVGSKTVIQIRSHAQKYFLKVQKNGTSEHVPPPRPKRKAAHPYPQKAPKSAPTASHVTGPLQSSSAFIEPAYIYSQDSSSVLGTPVTSVPLSSWNYNTMPPSNVQPATKDDIGLAGAGQPAPITCCYSSSNENTPPTWPSNNGFEQRNQAKAIKVMPDFAQVYSFIGSVFDPNSTNHLHRLKQMDPINMETVLLLMRNLSMNLMSPEFEDHKRLLSSYGANSEEAKFVNPCSNSLKSESAVLTA 343
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc272120g00006 343 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 67 121 IPR017930 -
Stsc272120g00006 343 NCBIfam myb-like DNA-binding domain, SHAQKYF class 70 119 IPR006447 GO:0003677
Stsc272120g00006 343 Gene3D - 75 122 - -
Stsc272120g00006 343 PANTHER SWI/SNF COMPLEX-RELATED 49 303 - -
Stsc272120g00006 343 SMART sant 71 119 IPR001005 -
Stsc272120g00006 343 Pfam Myb-like DNA-binding domain 72 117 IPR001005 -
Stsc272120g00006 343 SUPERFAMILY Homeodomain-like 66 122 IPR009057 -
Stsc272120g00006 343 MobiDBLite consensus disorder prediction 26 41 - -
Stsc272120g00006 343 CDD SANT 74 117 IPR001005 -
Stsc272120g00006 343 ProSiteProfiles Myb-like domain profile. 67 117 IPR001005 -
Stsc272120g00006 343 FunFam protein REVEILLE 6 isoform X1 74 122 - -
Stsc272120g00006 343 ProSiteProfiles SANT domain profile. 70 123 IPR017884 -
Stsc272120g00006 343 MobiDBLite consensus disorder prediction 121 158 - -
Stsc272120g00006 343 MobiDBLite consensus disorder prediction 24 65 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc272120g00006 Stsc-Chr272120 24543 28827 Dispersed/Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Stsc272120g00006 Myb_DNA-binding 2.9e-11 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc272120g00006 - - aip:107622330 587.03