Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc272120g00003 ATGTCAGTTTACGACGCAGCATTCGTAAATACACAGCTCTCAAAGCGCACTTCCATCTTCGGTCTCCGTCTATGGGTCCTCATCGGAATCCTAGTCGGCGCTCTCATTGTCTTCTCCCTCTTCCTCCTCTCCCTCTGCTTCATCTCCCGCCGTAACCGCCACCGCCGCCGCAACCGCAAGCCTCTCACTCCTCTCGTCTCCAAGGAAATCCAAGAAATCATTCCCAATCCTCAACCAAATGAACTCCACCTCGACATCGCAAAATCTGCGGCAGCTGCGGCGGCGGAACAGCACCGCAGGGTGGTGGCTGCTGTGGCGTTCTCAAGCGGAGAAAGCAAAGGCGGCGGCGGCGGCGGAGTAGGAGGAGGAGGAGGAGGAAGCGCGTGTGAAACGACGTCGTCGTTTGGGAGTGGAAGCATATCGGTGGGGCCAGAGGTTTCGCATCTTGGTTGGGGGAAGTGGTTTACGCTGAGAGAAATGGAGGATGCTACTGGAGGAATGTGTGAAGAGAATGTGATCGGTGAAGGTGGCTATGGAATCGTTTATCGTGGTGTTCTCTCTGATGGTACCAATGTTGCTGTTAAGAATCTCTTGAATAACAAGGGACAAGCTGAGAGAGAATTTAGGGTAGAGGTAGAAGCTATTGGTCGCGTGCGGCACAAGAATCTTGTTAGGTTGCTTGGATACTGTGTTGAGGGAGCATACAGGATGCTTGTGTATGAATATGTTGACAATGGGAATCTGGATCAGTGGCTGCATGGGGAGGTTGATTCTGTGAGCCCTCTGACTTGGGATATCCGCATGAACATCGTCTTGGGAACGGCAAAGGGATTGGCTTATCTTCATGAAGGACTTGAACCGAAAGTTGTCCACCGAGATGTGAAATCAAGCAATATACTCCTTGATCGCCAATGGAACCCAAAGGTTTCTGACTTTGGGCTTGCTAAGCTTCTCTGTTCTGATCATAGCTATGTCACAACCAGAGTGATGGGGACATTTGGTTATGTTGCACCAGAGTATGCATGCACGGGAATGCTGACCGAGAAGAGTGATGTTTATAGCTTTGGGATACTTATTATGGAAATAATTACTGGAAGAAGTCCCGTTGATTATAGTAAACCCCAAGGAGAGGTTAATTTAATTGAGTGGTTGAAAACTATGGTTGGCAATAGAAAATCTGAGGAAGTCATCGATCCAAAGCTTCCTGAAAAGCCATCTTCAAAGGCTCTTAAGCGTGCTCTGTTGGTTGCTCTTAAATGTGTTGATCCTGATGCCACAAAGAGACCTAAAATTGGACATGTAATTCACATGCTTGAAGCTGATGACCTCCTATTCCATGATGAACGGAGGACTGTGGGAGAATCGTCACGATCCCATCGTGATTATCATCATCATGAGCAAAAGGACTCTAGTAGAGACAGAAAGCCAGCAGGTGGAGAGATCACTGATCAAAGTGAAGATGATAATAGTGGTAAAAATCTCGCTCATCCCACTAGGTTGAGATGA 1506 0.4807 MSVYDAAFVNTQLSKRTSIFGLRLWVLIGILVGALIVFSLFLLSLCFISRRNRHRRRNRKPLTPLVSKEIQEIIPNPQPNELHLDIAKSAAAAAAEQHRRVVAAVAFSSGESKGGGGGGVGGGGGGSACETTSSFGSGSISVGPEVSHLGWGKWFTLREMEDATGGMCEENVIGEGGYGIVYRGVLSDGTNVAVKNLLNNKGQAEREFRVEVEAIGRVRHKNLVRLLGYCVEGAYRMLVYEYVDNGNLDQWLHGEVDSVSPLTWDIRMNIVLGTAKGLAYLHEGLEPKVVHRDVKSSNILLDRQWNPKVSDFGLAKLLCSDHSYVTTRVMGTFGYVAPEYACTGMLTEKSDVYSFGILIMEIITGRSPVDYSKPQGEVNLIEWLKTMVGNRKSEEVIDPKLPEKPSSKALKRALLVALKCVDPDATKRPKIGHVIHMLEADDLLFHDERRTVGESSRSHRDYHHHEQKDSSRDRKPAGGEITDQSEDDNSGKNLAHPTRLR 501
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc272120g00003 501 MobiDBLite consensus disorder prediction 451 494 - -
Stsc272120g00003 501 Gene3D Phosphorylase Kinase; domain 1 142 242 - -
Stsc272120g00003 501 PANTHER OS01G0323000 PROTEIN 7 464 - -
Stsc272120g00003 501 SUPERFAMILY Protein kinase-like (PK-like) 141 439 IPR011009 -
Stsc272120g00003 501 Pfam Protein kinase domain 170 436 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc272120g00003 501 ProSitePatterns Serine/Threonine protein kinases active-site signature. 289 301 IPR008271 GO:0004672|GO:0006468
Stsc272120g00003 501 FunFam Probable serine/threonine-protein kinase At1g01540 147 242 - -
Stsc272120g00003 501 Gene3D Transferase(Phosphotransferase) domain 1 243 451 - -
Stsc272120g00003 501 ProSiteProfiles Protein kinase domain profile. 167 444 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc272120g00003 501 CDD STKc_IRAK 173 439 - -
Stsc272120g00003 501 FunFam Putative receptor-like serine/threonine-protein kinase 243 453 - -
Stsc272120g00003 501 SMART serkin_6 167 445 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc272120g00003 501 MobiDBLite consensus disorder prediction 451 501 - -
Stsc272120g00003 501 ProSitePatterns Protein kinases ATP-binding region signature. 173 195 IPR017441 GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc272120g00003 Stsc-Chr272120 8689 11289 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc272120g00003 26 439 Trihelix Transcription Factor Family AT5G38560 39.524 3.24e-92 293
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-V Stsc272120g00003 Pkinase 9.4e-48 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc272120g00003 - - lang:109330952 721.079