Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc272119g00010 ATGGGCAGCAGTGAGATGGATAAAACCCCAAAAGAGAAGGAGTCAAAGACGACTCCGCCTGCTTCACAGGAGCAATCTTCAGCCACCAGCACTGGAACAGTTAATCCTGACTGGTCTAGTTTTCAGGCATATTCTCCTATACCTCCACATGGCTTCATGGCATCAAGTCCCCAAGCTGCCCCATATATGTGGGGTGTCCAGCATATTATGCCTCCCTATGGTACTCCAACACATCCCTATGTTGCAATGTATCCCCATGGTGGCATATATGCACATCCATCCATGCCTCCGGGATCTTATCCTTTTAGTCCTTTTCCCATGCCTTCCCCAAATGGGACTCCTGCTGCTGGAATTCATTCAAAGAGTGGTGAGAGTGCAAGTGAAGGTAGCAGTGAAGGAAGTGATGCTAATTCTCAGAATGACTCTCAATTGAAATCAGGGGGCAGACAGGATTCTTATGAAGATGAACCATCTCAAAATGGCAGTTCGGTGCATGCTCTGCAAAATGGGGGACTTAATACACCTCATACAGTAGTAAATCAAACCATGTCTGTGATACCTATCACTGCTGCTGGTACTCCTGGAGCTGTTCCTGGTCCCACAACAAACTTGAATATAGGAATGGATTATTGGGGCACACCAACAGCATCCAACATTCCTGCTCTGCGTGGAAAGGTTCCATCTACTGCAGTTGCTGGAGGGATGGTTGCTGCTGGATCACGAGATAGTGTTCAGTCACAACTTTGGCTACAGGATGAAAGAGAGCTTAAAAGACAAAGGAGGAAGCAGTCTAACAGGGAATCTGCTCGAAGATCCAGATTGCGCAAGCAGGTGACAGAGATTAACCTATAA 852 0.4695 MGSSEMDKTPKEKESKTTPPASQEQSSATSTGTVNPDWSSFQAYSPIPPHGFMASSPQAAPYMWGVQHIMPPYGTPTHPYVAMYPHGGIYAHPSMPPGSYPFSPFPMPSPNGTPAAGIHSKSGESASEGSSEGSDANSQNDSQLKSGGRQDSYEDEPSQNGSSVHALQNGGLNTPHTVVNQTMSVIPITAAGTPGAVPGPTTNLNIGMDYWGTPTASNIPALRGKVPSTAVAGGMVAAGSRDSVQSQLWLQDERELKRQRRKQSNRESARRSRLRKQVTEINL 283
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc272119g00010 283 Pfam G-box binding protein MFMR 1 96 IPR012900 -
Stsc272119g00010 283 MobiDBLite consensus disorder prediction 1 47 - -
Stsc272119g00010 283 PANTHER G-BOX-BINDING FACTOR 3-RELATED 1 278 IPR044827 GO:0003700|GO:0006355|GO:0043565
Stsc272119g00010 283 MobiDBLite consensus disorder prediction 255 283 - -
Stsc272119g00010 283 MobiDBLite consensus disorder prediction 106 176 - -
Stsc272119g00010 283 MobiDBLite consensus disorder prediction 115 176 - -
Stsc272119g00010 283 Pfam bZIP transcription factor 253 277 IPR004827 GO:0003700|GO:0006355
Stsc272119g00010 283 CDD bZIP_plant_GBF1 258 277 IPR045314 GO:0003700|GO:0006355
Stsc272119g00010 283 MobiDBLite consensus disorder prediction 1 18 - -
Stsc272119g00010 283 ProSitePatterns Basic-leucine zipper (bZIP) domain signature. 260 275 IPR004827 GO:0003700|GO:0006355
Stsc272119g00010 283 Pfam Disordered region downstream of MFMR 112 220 - -
Stsc272119g00010 283 MobiDBLite consensus disorder prediction 19 42 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc272119g00010 Stsc-Chr272119 50843 55372 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc272119g00010 1 278 bZIP Transcription Factor Family AT2G35530 55.193 8.32e-102 301
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bZIP Stsc272119g00010 MFMR_assoc 1.7e-43 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc272119g00010 K09060 - gmx:100101882 422.55