Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc272119g00009 ATGGGCAGCAGTGAGATGGATAAAACCCCAAAAGAGAAGGAGTCAAAGACGACTCCGCCTGCTTCACAGGAGCAATCTTCAGCCACCAGCACTGGAACAGTTAATCCTGACTGGTCTAGTTTTCAGGCATATTCTCCTATACCTCCACATGGCTTCATGGCATCAAGTCCCCAAGCTGCCCCATATATGTGGGGTGTCCAGCATATTATGCCTCCCTATGGTACTCCAACACATCCCTATGTTGCAATGTATCCCCATGGTGGCATATATGCACATCCATCCATGCCTCCGGGATCTTATCCTTTTAGTCCTTTTCCCATGCCTTCCCCAAATGGGACTCCTGCTGCTGGAATTCATTCAAAGAGTGGTGAGAGTGCAAGTGAAGGTAGCAGTGAAGGAAGTGATGCTAATTCTCAGAATGACTCTCAATTGAAATCAGGGGGCAGACAGGATTCTTATGAAGATGAACCATCTCAAAATGGCAGTTCGGTGCATGCTCTGCAAAATGGGGGACTTAATACACCTCATACAGTAGTAAATCAAACCATGTCTGTGATACCTATCACTGCTGCTGGTACTCCTGGAGCTGTTCCTGGTCCCACAACAAACTTGAATATAGGAATGGATTATTGGGGCACACCAACAGCATCCAACATTCCTGCTCTGCGTGGAAAGGTTCCATCTACTGCAGTTGCTGGAGGGATGGTTGCTGCTGGATCACGAGATAGTGTTCAGTCACAACTTTGGCTACAGGATGAAAGAGAGCTTAAAAGACAAAGGAGGAAGCAGTCTAACAGGGAATCTGCTCGAAGATCCAGATTGCGCAAGCAGGCTGAGTGTGATGAGCTAGCTCAGCGTGCTGAGGCATTGAAAGAAGAAAATGCTTCTCTCCGATCAGAAGTAAGTCGGATCAGAAGCGAGTATGAGCAGCTAGCTGCTGAGAATGCAGCTCTCAAGGAGAGACTTGGCAAAATACCTGGGAATGATGATCTTAGGTCCAGAACAATGAATGAGCAGCCTGTGGGTGACGACACTCAACAGAGCGGACAGGCAGAGGCCGTGGAGGGTGGTAATTAG 1077 0.48 MGSSEMDKTPKEKESKTTPPASQEQSSATSTGTVNPDWSSFQAYSPIPPHGFMASSPQAAPYMWGVQHIMPPYGTPTHPYVAMYPHGGIYAHPSMPPGSYPFSPFPMPSPNGTPAAGIHSKSGESASEGSSEGSDANSQNDSQLKSGGRQDSYEDEPSQNGSSVHALQNGGLNTPHTVVNQTMSVIPITAAGTPGAVPGPTTNLNIGMDYWGTPTASNIPALRGKVPSTAVAGGMVAAGSRDSVQSQLWLQDERELKRQRRKQSNRESARRSRLRKQAECDELAQRAEALKEENASLRSEVSRIRSEYEQLAAENAALKERLGKIPGNDDLRSRTMNEQPVGDDTQQSGQAEAVEGGN 358
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc272119g00009 358 MobiDBLite consensus disorder prediction 115 176 - -
Stsc272119g00009 358 PANTHER G-BOX-BINDING FACTOR 3-RELATED 1 342 IPR044827 GO:0003700|GO:0006355|GO:0043565
Stsc272119g00009 358 ProSitePatterns Basic-leucine zipper (bZIP) domain signature. 260 275 IPR004827 GO:0003700|GO:0006355
Stsc272119g00009 358 ProSiteProfiles Basic-leucine zipper (bZIP) domain profile. 255 318 IPR004827 GO:0003700|GO:0006355
Stsc272119g00009 358 MobiDBLite consensus disorder prediction 332 358 - -
Stsc272119g00009 358 MobiDBLite consensus disorder prediction 320 358 - -
Stsc272119g00009 358 MobiDBLite consensus disorder prediction 255 278 - -
Stsc272119g00009 358 Pfam Disordered region downstream of MFMR 112 220 - -
Stsc272119g00009 358 Coils Coil 273 321 - -
Stsc272119g00009 358 SUPERFAMILY Leucine zipper domain 256 311 IPR046347 GO:0003700|GO:0006355
Stsc272119g00009 358 MobiDBLite consensus disorder prediction 106 176 - -
Stsc272119g00009 358 MobiDBLite consensus disorder prediction 1 48 - -
Stsc272119g00009 358 MobiDBLite consensus disorder prediction 1 18 - -
Stsc272119g00009 358 CDD bZIP_plant_GBF1 258 308 IPR045314 GO:0003700|GO:0006355
Stsc272119g00009 358 Pfam bZIP transcription factor 253 315 IPR004827 GO:0003700|GO:0006355
Stsc272119g00009 358 SMART brlzneu 253 317 IPR004827 GO:0003700|GO:0006355
Stsc272119g00009 358 Pfam G-box binding protein MFMR 1 96 IPR012900 -
Stsc272119g00009 358 Gene3D - 256 309 - -
Stsc272119g00009 358 MobiDBLite consensus disorder prediction 19 42 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc272119g00009 Stsc-Chr272119 50843 56247 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc272119g00009 1 352 bZIP Transcription Factor Family AT2G35530 54.015 7.94e-133 384
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bZIP Stsc272119g00009 MFMR_assoc 2.9e-43 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc272119g00009 K09060 - gmx:100101882 539.265