Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc272119g00005 ATGGGTTACGAAGACGATCCGTATCGCGATGAGGACGGAGAACCCTTGATGGATTACGATGACATTCATTCCGATCCCGAGCCGGAGCCCCGCCATGACGATGCGCTCCTCGATGATTACGACGACGAAGGGGACGGTGGCCATTGGCCTCGCCGTGAGCGGTCGCAGACTCCGGTCTACGATAACGATTCGTCCAAGTCGAAGCCCAGGAAGAGGCTCATCAAGAAGGGCGACACCGGGAGGCAGTCGGTGGCGCCAGAGCTCGAAGATGAGGTGGCGGAGGAGGATGACGAGCCGAGGTTCGCGAGGGAGGGGTCGGAGGAAGGGAGGAAGAGGAAGAAGGGGAAGGAGGTTGGAAGTGCGAAGAAGGAGAAGAGGCTTCAGGGGGACAAGAGGTTTTCAAGTGGCGGCAGTGGGAAGAGCGGGTCCAAATTTGGGGGATCTAAGAAAGGGTTTGGTGGGAAGGGAGGGAAGGATCATGATGGTGAAGTTAAGGAGATGTGGGATACCATTGCTGGCGGTGATTCTGAGGATGATCATGAGGGTGTCAGGAATGTGGATGATGACAACTTCATAGATGACACGGGGGTGGAAGGTGGTGGTTACTATGGAAGTGATGAACCACGTTCTCCTGGTAGTGCTCCCCAGGCAGAGGAAGGTGAAGAGGATGATGAAATTAAGGATCTTTTCAAGATAGGCAAGAAAAAGAAGAAGAACGAGAGAAGTCCTGCAGAAATAGCTTTATTAGTCGAGAATGTCATGGCTGAGCTTGAGGTCACAGCTGAAGAGGATGCTGAACTTAATAGACAGGGGAAGCCTGCCATTANNNNNNNNNNTCTAACAGAAGTCCTCTCAAAGAAACAGCTTCAATTAGAGTTTTTGGACCATGGAGTACTAACTTTATTGAAGAATTGGCTTGAGCCACTTCCTGATGGAAGCTTGCCAAATATTAACATACGCACAGCAATTTTGAATATTTTGAATGATTTTCCTATTGACCTAGAGCAGTATGATAGAAGAGAACAGCTGAAGAAGAGTGGTCTTGGAAAGGTTATCATGTTCTTATCGAAGTCTGATGAAGAAATCAATGTAAATAGAAAACTAGCCAAGGAACTGGTTGACAAATGGAGCCGACCTATATTTAATAAGAGTACTCGGTTTGAAGACATGAGAACTGCTGAGGATGACAGGATTCCATACAGGAGGCCAACTGTTAAAAAGCCTGCAAATAAAGCAGCAGGGATGGAATCTAGAGATGGTGATCTTGATTTGGAATTTTCACAGCCTAGGTCTGGACAGTCTTCTTCAAGGCAACATGCATCAAGGCCAGAAGCGACACCTTTGGATTTTGTGATCCGTCCGCAGTCTAAAATTGATCCAGAAGAAGTTAGAGCACGAGCAAAAGCTGCTGCACAAGATCAGCAGCGAATGAAGATGAATAAGAAATTGCAGCAGTTGAGGGCACCGAAGAAGAAGCAGCTCCAAGCTACAAAACTAAGCGTGGAAGGTCGTGGCATGATCAAATATTTGTAG 1533 0.4755 MGYEDDPYRDEDGEPLMDYDDIHSDPEPEPRHDDALLDDYDDEGDGGHWPRRERSQTPVYDNDSSKSKPRKRLIKKGDTGRQSVAPELEDEVAEEDDEPRFAREGSEEGRKRKKGKEVGSAKKEKRLQGDKRFSSGGSGKSGSKFGGSKKGFGGKGGKDHDGEVKEMWDTIAGGDSEDDHEGVRNVDDDNFIDDTGVEGGGYYGSDEPRSPGSAPQAEEGEEDDEIKDLFKIGKKKKKNERSPAEIALLVENVMAELEVTAEEDAELNRQGKPAIXXXXLTEVLSKKQLQLEFLDHGVLTLLKNWLEPLPDGSLPNINIRTAILNILNDFPIDLEQYDRREQLKKSGLGKVIMFLSKSDEEINVNRKLAKELVDKWSRPIFNKSTRFEDMRTAEDDRIPYRRPTVKKPANKAAGMESRDGDLDLEFSQPRSGQSSSRQHASRPEATPLDFVIRPQSKIDPEEVRARAKAAAQDQQRMKMNKKLQQLRAPKKKQLQATKLSVEGRGMIKYL 510
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc272119g00005 510 Coils Coil 250 270 - -
Stsc272119g00005 510 MobiDBLite consensus disorder prediction 153 191 - -
Stsc272119g00005 510 SUPERFAMILY Conserved domain common to transcription factors TFIIS, elongin A, CRSP70 295 383 IPR035441 -
Stsc272119g00005 510 PANTHER PROTEIN IWS1 HOMOLOG 1 1 510 IPR044204 GO:0009742|GO:0032784
Stsc272119g00005 510 ProSiteProfiles TFIIS N-terminal domain profile. 300 383 IPR017923 -
Stsc272119g00005 510 Pfam TFIIS helical bundle-like domain 326 380 IPR017923 -
Stsc272119g00005 510 MobiDBLite consensus disorder prediction 19 68 - -
Stsc272119g00005 510 Gene3D Conserved domain common to transcription factors TFIIS, elongin A, CRSP70 243 386 IPR035441 -
Stsc272119g00005 510 MobiDBLite consensus disorder prediction 427 442 - -
Stsc272119g00005 510 MobiDBLite consensus disorder prediction 394 460 - -
Stsc272119g00005 510 MobiDBLite consensus disorder prediction 98 131 - -
Stsc272119g00005 510 MobiDBLite consensus disorder prediction 1 18 - -
Stsc272119g00005 510 MobiDBLite consensus disorder prediction 1 227 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc272119g00005 Stsc-Chr272119 36633 40624 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR IWS1 Stsc272119g00005 Med26 3.2e-13 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc272119g00005 K17498 - gmx:100801805 752.666