Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc272117g00007 ATGGAGATAGAGAATAATAATAATAACAACACTAATAAAACCAGCACTGCTACTACTAGCAATGGAAGCAGTAGTAGTAATAGTGGTGGTGATCATGAAGAGAGAAGAGAGAAGAGAGGAATGTACCTTGTTTGGGAAGACTTAACTGTTGTGGTTCCAAACTTTGGGAATGGACACACAAGAAGGTTGCTTAATGGCTTGAATGGATATGCTGAACCTAACAGACTCATGGCTATTATGGGTCCTTCTGGCTCTGGAAAATCCACTCTTCTTGATTCTTTGGCAGGTAGACTCGCTAGGAATGTTATCTTGTCTGGAAATGTGCTTTTAAATGGAAAGAAAAGAAGATTAGACTTTGGTGGTGTTGCTTATGTGACACAAGAAGACGTATTGTTGGGAACACTAACAGTTAGAGAAACAATATCCTATTCAGCAAATCTAAGGCTTCCATCAAGAATGAGCAAAGAAGAGGTAAATGAGATTGTAGAAGGAACAATAATGGAGATGGGTCTTGAAGATTGTGCTGATAGGGTTATAGGGAATTGGCATTTGAGAGGCATAAGTGGTGGAGAAAAGAAGAGACTAAGCATAGCACTTGAGATCTTAACAAGGCCTTCTCTTTTGTTCCTTGATGAACCAACCACTGGCCTTGATAGTGCTTCAGCATATTTTGTAGTTCATACTTTGAGGAACATTGCTCATGATGGCAAGACTGTAATTTCATCCATACACCAACCAAGTAGTGAGGTTTTTCAACTCTTTGATGATCTCTTCCTGCTTTCTGGAGGCCAAACTATATATTTTGGACCAGCTCAAAACTCTGTTGAGTTCTTTGGGAAAGCAGGGTTCCCATGTCCATGTAGAGGAAACCCTTCTGATCATTTCCTCCGCTGTATTAATTCAGACTTTGATGCTGTCACAACCACCATCATGGCCTCCCAAAGAATCCATGAACAAAAATCATACATGAACCTATCAACCGCCGCAGTCAAGGCAAAACTCATTGAGAGATACCGTTGGTCTGAATATGCAACCGCCGCGAGAACTAGAATCAAACAAATCTCCAACATTGAAGGATATGGTGAAAACAAAAACAAGAGGCAAGCCAAATGGGGGAAGCAACTAACAACATTAACTCGTAGATCTTTCGTGAACATGTACAGGGATGTTGGGTACTATTGGATAAGGCTAGCAATCTACATAGCCTTATCTTTATCAGTTGGAACAATCTTCTTTGATGTTGGAAAAAGTTACAGAGCCATCTTTGCAAGAGGTGCATGTGGTGCTTTCATTTCAGGTTTCATGACATTCATGTCCATCGGAGGCTTCCCGTCCTTCATAGAGGAAATGAAGGTGTTTTATAAAGAAAGGCTTAATGGATACTACGGAATTAGTGTATACATTCTATCAAATTTTCTGTCTTCATTTCCCTTTGTGTCAATGATGTCCATTGCCACTGCCACCATAACCTATTACATGGTGAAGTTTCGTCCAGAATTTTCGCATCTTTGCTACATCACCCTTGATCTTATTGCATGCATTGCTGTTGTGGAGAGTTCCATGATGATCATAGCTTCATTAGTTCCCAACTTTCTCACGGGAGTAATAATAGGAGCAGGATATATTGGTGTTATGATGATGACTGCTGGCTACTTCCGTCAGATCACTGATCTTCCCAAATTCTTCTGGCGTTACCCAGTTTCATACATTAATTATGGAGCATGGGGCTTGGAGGGAGCATTCAAGAATGATTTGATTGGGCAGGAGTTTGATCCTCTAGTACCAGGTGGTCCAAAGCTGAAAGGAGAAAGCATACTCACAAACATGCTTGGCATGAGAATTGACTACTCAAAATGGTGGGACTTAGCTGCTGTCGTGTTCATCCTCATAGTGCTTAGAGTTCTCTTCTTTTTCATTCTCAGATTCAGAGAGAACGCTTCAAATTTCCTTTATAGTATCTATGCAAAGCAAGCAATGCATCGCATCAAGAAGAGGCCATCTTTCAGGAAAACACCGTCTTTCTCTTCAAAGAGGCACCAACCTCTGCATCCCTTGTCTTCTCAAGAGGGTCTCAACTCACCAATTCATTAA 2091 0.4084 MEIENNNNNNTNKTSTATTSNGSSSSNSGGDHEERREKRGMYLVWEDLTVVVPNFGNGHTRRLLNGLNGYAEPNRLMAIMGPSGSGKSTLLDSLAGRLARNVILSGNVLLNGKKRRLDFGGVAYVTQEDVLLGTLTVRETISYSANLRLPSRMSKEEVNEIVEGTIMEMGLEDCADRVIGNWHLRGISGGEKKRLSIALEILTRPSLLFLDEPTTGLDSASAYFVVHTLRNIAHDGKTVISSIHQPSSEVFQLFDDLFLLSGGQTIYFGPAQNSVEFFGKAGFPCPCRGNPSDHFLRCINSDFDAVTTTIMASQRIHEQKSYMNLSTAAVKAKLIERYRWSEYATAARTRIKQISNIEGYGENKNKRQAKWGKQLTTLTRRSFVNMYRDVGYYWIRLAIYIALSLSVGTIFFDVGKSYRAIFARGACGAFISGFMTFMSIGGFPSFIEEMKVFYKERLNGYYGISVYILSNFLSSFPFVSMMSIATATITYYMVKFRPEFSHLCYITLDLIACIAVVESSMMIIASLVPNFLTGVIIGAGYIGVMMMTAGYFRQITDLPKFFWRYPVSYINYGAWGLEGAFKNDLIGQEFDPLVPGGPKLKGESILTNMLGMRIDYSKWWDLAAVVFILIVLRVLFFFILRFRENASNFLYSIYAKQAMHRIKKRPSFRKTPSFSSKRHQPLHPLSSQEGLNSPIH 696
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc272117g00007 696 Gene3D - 29 280 IPR027417 -
Stsc272117g00007 696 FunFam ABC transporter G family member 11 37 281 - -
Stsc272117g00007 696 SMART AAA_5 73 272 IPR003593 GO:0016887
Stsc272117g00007 696 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 43 287 IPR003439 GO:0005524
Stsc272117g00007 696 Pfam ABC-2 type transporter 374 583 IPR013525 GO:0016020|GO:0140359
Stsc272117g00007 696 CDD ABCG_EPDR 40 269 - -
Stsc272117g00007 696 MobiDBLite consensus disorder prediction 673 696 - -
Stsc272117g00007 696 Pfam ABC-2 type transporter 244 300 IPR043926 GO:0140359
Stsc272117g00007 696 MobiDBLite consensus disorder prediction 1 36 - -
Stsc272117g00007 696 Pfam ABC transporter 65 214 IPR003439 GO:0005524
Stsc272117g00007 696 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 43 279 IPR027417 -
Stsc272117g00007 696 MobiDBLite consensus disorder prediction 666 696 - -
Stsc272117g00007 696 MobiDBLite consensus disorder prediction 1 28 - -
Stsc272117g00007 696 ProSitePatterns ABC transporters family signature. 187 201 IPR017871 GO:0005524|GO:0016887
Stsc272117g00007 696 PANTHER ABC TRANSPORTER G FAMILY MEMBER 11 24 665 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc272117g00007 Stsc-Chr272117 50339 56908 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc272117g00007 62 258 Calmodulin-binding Proteins AT2G36910 29.817 1.08e-11 66.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc272117g00007 K05681 - gmx:100806806 1110.9