Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc272115g00008 ATGCCGATCAGAAACATCGCTATCGGAAGGCCCGAAGAGGCAACTCACCCAGACACCTTGAAGGCTGGACTCGCTGAGTTCATCTCTACCTTGATCTTCGTCTTCGCTGGTTCAGGTTCCAGCATCGCTTACAACAAGCTCACTAACGATGGACCCGCCACCCCCACCGGCCTCATCGCCGCCGCCATCGCCCATGCATTCGCCCTCTTCGTCGCTGTCTCCGTTGGCGCCAACATCTCCGGTGGCCACGTCAACCCCGCCGTCACCTTCGGCGCCTTCGTCGGCGGCAACATCACCTTCCTCCGCGGCATCGTCTACGTCATCGCCCAGCTCCTCGGCTCCATCGTCGCTGCCTTGCTCCTCAAGTTCGTCACCGCATCCACTGTTCCAGCATTTGCACTGTCATCAGGAGTAGGAGTTGGTGAGGCTTTGGTGTTGGAGATTGTGTTGACTTTCGGATTGGTGTACACAGTGTACGCAACCGCCGTTGACCCGAAGAAGGGTAGTTTGGGAACTATTGCACCAATCGCGATTGGTTTCATCGTTGGTGCTAACATCCTTGTAGGTGGGGCCTTCGACGGTGCATCCATGAACCCTGCCGTTTCCTTCGGACCCGCCGTGGTGAGCTGGAGCTGGAGCAACCACTGGATCTACTGGGTGGGCCCACTCGTCGGTGGTGGTCTTGCCGGAGTCATCTACGAAGTTCTCTTCATCAGCCACACCCATGAGCAGCTCCCAACCACTGACTACTAG 753 0.5777 MPIRNIAIGRPEEATHPDTLKAGLAEFISTLIFVFAGSGSSIAYNKLTNDGPATPTGLIAAAIAHAFALFVAVSVGANISGGHVNPAVTFGAFVGGNITFLRGIVYVIAQLLGSIVAALLLKFVTASTVPAFALSSGVGVGEALVLEIVLTFGLVYTVYATAVDPKKGSLGTIAPIAIGFIVGANILVGGAFDGASMNPAVSFGPAVVSWSWSNHWIYWVGPLVGGGLAGVIYEVLFISHTHEQLPTTDY 250
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc272115g00008 250 NCBIfam MIP family channel protein 25 233 IPR000425 GO:0015267|GO:0016020|GO:0055085
Stsc272115g00008 250 CDD MIP 21 236 IPR000425 GO:0015267|GO:0016020|GO:0055085
Stsc272115g00008 250 ProSitePatterns MIP family signature. 83 91 IPR022357 -
Stsc272115g00008 250 SUPERFAMILY Aquaporin-like 12 246 IPR023271 -
Stsc272115g00008 250 PRINTS Major intrinsic protein family signature 179 201 IPR000425 GO:0015267|GO:0016020|GO:0055085
Stsc272115g00008 250 PRINTS Major intrinsic protein family signature 146 164 IPR000425 GO:0015267|GO:0016020|GO:0055085
Stsc272115g00008 250 PRINTS Major intrinsic protein family signature 65 89 IPR000425 GO:0015267|GO:0016020|GO:0055085
Stsc272115g00008 250 PRINTS Major intrinsic protein family signature 216 236 IPR000425 GO:0015267|GO:0016020|GO:0055085
Stsc272115g00008 250 PRINTS Major intrinsic protein family signature 21 40 IPR000425 GO:0015267|GO:0016020|GO:0055085
Stsc272115g00008 250 PRINTS Major intrinsic protein family signature 102 121 IPR000425 GO:0015267|GO:0016020|GO:0055085
Stsc272115g00008 250 Pfam Major intrinsic protein 14 233 IPR000425 GO:0015267|GO:0016020|GO:0055085
Stsc272115g00008 250 FunFam Probable aquaporin TIP1-1 4 250 - -
Stsc272115g00008 250 Gene3D Glycerol uptake facilitator protein. 4 250 IPR023271 -
Stsc272115g00008 250 PANTHER AQUAPORIN-8 6 245 IPR034294 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc272115g00008 Stsc-Chr272115 44528 46010 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc272115g00008 1 250 Major Intrinsic Protein MIP AT2G36830 80.478 5.95e-144 401
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc272115g00008 K09873 - gmx:100527509 439.884