Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc272115g00007 ATGGCCATGCCTTCTTCAACCTCTTCAACAACCTCCTCATCCTTCGGTGGTTTCGATCTCGCTACACCAACCACAACCGCAAACGACGACGAAGACATGGCGAATTGCTTGATCCTCCTGGCTCAAGGCGGACGTGGTGGACCCCACCAGAATAACAGCCATAACAACAAGAAGAAAGAAATAAGCATGTTTAATGTTTACGATTGCAAGACTTGTAACCGAAGCTTCCCTTCCTTCCAAGCTTTGGGAGGACACAGAGCCAGCCACAAGAAGCCCAAGATCTTATCAAACAGTAGTAATACAGAACACAATTACCATAATGACCCTACAAGCACCGCCCTCACCTTGCAAATATCAAACACCAGGTCCTTGTACGGAACCACCACCGCTGCCGCCGCCATGGAAAGTACTACTACTGCTGCTACTCCTAATAGTTGCAAGACAAATAATAATAATAAGGTTCACGAGTGTTCCATTTGCGGTGCTGAATTCACTTCTGGCCAAGCTTTGGGGGGCCATATGAGGAGGCACAGGGGTTTCTTGACCATGTCTTCAGCCGCAACCGCCACCGCCACCACGACGACAACCGCAACATCATCATCTGTTAGTGGTGCAAATTTAAATGCTAGTGATCATCAAGTAGAGACGAAGAACAATGTTCTGAAGCTGGATCTAAATCTTCCGGCACCGGAAGATGATGATCATCATCATCATCATCAAAGGAGGTCGTTTCAGTCGAAAGAGAAAGTTATTGTGTTCTCTTCTGCAGCTTCTCTGGTGGATTGCCATTATTAA 795 0.4679 MAMPSSTSSTTSSSFGGFDLATPTTTANDDEDMANCLILLAQGGRGGPHQNNSHNNKKKEISMFNVYDCKTCNRSFPSFQALGGHRASHKKPKILSNSSNTEHNYHNDPTSTALTLQISNTRSLYGTTTAAAAMESTTTAATPNSCKTNNNNKVHECSICGAEFTSGQALGGHMRRHRGFLTMSSAATATATTTTTATSSSVSGANLNASDHQVETKNNVLKLDLNLPAPEDDDHHHHHQRRSFQSKEKVIVFSSAASLVDCHY 264
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc272115g00007 264 ProSitePatterns Zinc finger C2H2 type domain signature. 69 89 IPR013087 -
Stsc272115g00007 264 ProSiteProfiles Zinc finger C2H2 type domain profile. 155 179 IPR013087 -
Stsc272115g00007 264 Gene3D Classic Zinc Finger 133 217 - -
Stsc272115g00007 264 SUPERFAMILY beta-beta-alpha zinc fingers 66 177 IPR036236 -
Stsc272115g00007 264 PANTHER ZINC FINGER PROTEIN ZAT5 25 242 - -
Stsc272115g00007 264 Pfam C2H2-type zinc finger 154 178 - -
Stsc272115g00007 264 Pfam C2H2-type zinc finger 66 92 - -
Stsc272115g00007 264 ProSitePatterns Zinc finger C2H2 type domain signature. 157 177 IPR013087 -
Stsc272115g00007 264 MobiDBLite consensus disorder prediction 226 246 - -
Stsc272115g00007 264 ProSiteProfiles Zinc finger C2H2 type domain profile. 67 94 IPR013087 -
Stsc272115g00007 264 SMART c2h2final6 67 89 IPR013087 -
Stsc272115g00007 264 SMART c2h2final6 155 177 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc272115g00007 Stsc-Chr272115 20788 21582 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc272115g00007 20 264 C2H2 Transcription Factor Family AT2G28200 42.424 1.16e-54 176
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Stsc272115g00007 zf-C2H2_6 4.7e-12 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc272115g00007 - - adu:107494043 306.219