Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc272113g00003 ATGCTTGATACCCAAGGCTACCTTGTGTTGTTCCTTCTATGGTTCATCTCCACCATTTTAATCAAATCTTTATTCACAAAGCCCCAAAGTCTTAGACTCCCACCAGGTCCCCCAATTTCCTTGCCACTTCTTGGTCACGCGCCTTACCTCCGATCCCTCCTTCACCAAGCTTTATACAAGCTATCACTACGCTATGGACCCCTTATTCACGTTCTTATTGGTTCCAAGCACGTTGTGGTTGCTTCCTCAGCGGAAATGGCGAAGCAGATTCTTAAGACTAATGAGGAATCCTTCTGCAACCGTCCGATCATGATAGCCAGCGAGAGCTTGACGTATGGCGCCGCGGACTACTTCTTCATTCCGTACGGAACATACTGGAGGTTCCTTAAGAAGCTATGCATGACAGAGCTTCTTAGCGGAAAAACCCTGGAGCACTTCGTCCGTGTTCGCCAGGACGAAGTGGAGGCGTTTCTAAGGAATATTCTAGAAATCTCTAAGAGCGGAAAGGCGATCGAGATGCGGCAGGAGTTGATAAGGCACACGAACAACGTAATCTCGAGGACGACGATGGGGAAGAAGAGCATCAAGAACGACGACGAGGTTGCGAGGCTGAGGAAGGTGATTAGGGAAGTTGGAGAGCTTCTTGGGGCGTTTAATTTGGGGGATATAATTGGTTTCATGAGGCCTCTTGATGTTCAAGGGTATGGGAAGAAGAACTGGGAAACGCACCACCAATTGGATGTGATGATGGAGAAGGTTTTGAAGGAGCATGAAGATGCAAGGTCAAAGTCTGATGATAGTGACAGGAAGAAGGATCTCTTTGACATTCTCTTGAACCTAATTGAAGCTGATGGCGACAATAAACTCACCAGAGAGAGTGCCAAAGCCTTCGCACTCGACATGTTCATCGCCGGGACTAATGGGCCAGCAAGTGTGTTAGAATGGTCACTAGCAGAGCTCATAAGGAACCCACACGCATTAAAGAAAGCAAGAGAAGAAATTGACTCTGTAGTTGGTAAGGACAGACTGGTGAAAGAATCAGATATACCAAATCTTCATTATCTCCAAGCAGTAGTTAAGGAAACTTTGAGGCTTCACCCACCAACCCCAATTTTCGCAAGAGAAGCCATAAGAAGCTGCCAAGTCGAAGGCTATGACATTCCTCAGCACTCCAAAATCTTTATCAATGCATGGGCCATTGGAAGAGATCCGAATCACTGGGACAACGCTCTCGCATACCGCCCGGAGAGATTCTTGCAAACAGAGGAAGAACCTTTGAAGGGTAAAATCNNNNNNNNNNTTGGAAGTGGAAGAAGAAGCTGCCCTGGCGCCTCGCTTGCGTTGCTTGTTATCCAAGGAACACTGGCGAGTTTGATTCAGTGCTTTGATTGGGTTGTTAATGATGGCAAGAATAATGAGGTTGATATGTCAGAGGAAGGAAGAGTAACTGTGTTTATGGCAAAGCCGTTAAAGTGTAAGCCTGTTACTCGCTTTGTTCCATTCTCATCAGCATGA 1515 0.4634 MLDTQGYLVLFLLWFISTILIKSLFTKPQSLRLPPGPPISLPLLGHAPYLRSLLHQALYKLSLRYGPLIHVLIGSKHVVVASSAEMAKQILKTNEESFCNRPIMIASESLTYGAADYFFIPYGTYWRFLKKLCMTELLSGKTLEHFVRVRQDEVEAFLRNILEISKSGKAIEMRQELIRHTNNVISRTTMGKKSIKNDDEVARLRKVIREVGELLGAFNLGDIIGFMRPLDVQGYGKKNWETHHQLDVMMEKVLKEHEDARSKSDDSDRKKDLFDILLNLIEADGDNKLTRESAKAFALDMFIAGTNGPASVLEWSLAELIRNPHALKKAREEIDSVVGKDRLVKESDIPNLHYLQAVVKETLRLHPPTPIFAREAIRSCQVEGYDIPQHSKIFINAWAIGRDPNHWDNALAYRPERFLQTEEEPLKGKIXXXXGSGRRSCPGASLALLVIQGTLASLIQCFDWVVNDGKNNEVDMSEEGRVTVFMAKPLKCKPVTRFVPFSSA 504
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc272113g00003 504 SUPERFAMILY Cytochrome P450 34 497 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc272113g00003 504 PRINTS P450 superfamily signature 304 321 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc272113g00003 504 PRINTS P450 superfamily signature 441 452 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc272113g00003 504 PRINTS P450 superfamily signature 432 441 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc272113g00003 504 PRINTS P450 superfamily signature 357 368 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc272113g00003 504 Gene3D Cytochrome P450 25 497 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc272113g00003 504 PANTHER CYTOCHROME P450 98A9 10 497 - -
Stsc272113g00003 504 Pfam Cytochrome P450 34 484 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc272113g00003 504 PRINTS E-class P450 group I signature 441 464 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc272113g00003 504 PRINTS E-class P450 group I signature 86 107 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc272113g00003 504 PRINTS E-class P450 group I signature 180 198 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc272113g00003 504 PRINTS E-class P450 group I signature 62 81 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc272113g00003 504 PRINTS E-class P450 group I signature 293 310 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc272113g00003 504 PRINTS E-class P450 group I signature 396 420 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc272113g00003 504 PRINTS E-class P450 group I signature 356 374 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc272113g00003 504 PRINTS E-class P450 group I signature 313 339 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc272113g00003 504 PRINTS E-class P450 group I signature 431 441 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc272113g00003 Stsc-Chr272113 25828 30964 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc272113g00003 1 497 Cytochrome P450 AT5G06900 40.519 1.33e-135 400
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc272113g00003 K24188 K15814 gmx:100037459 814.298