Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc272111g00004 ATGGCTCGTGGAAGGGTTCAGCTGAAGAGAATAGAGAACCCGGTCCACAGACAAGTTACCTTCTGCAAGCGCCGAGCAGGGCTTCTCAAGAAGGCGAAGGAGCTCTCTATCCTTTGCGATGCTGAAATTGGCCTTGTCATTTTCTCCGCTCATGGAAAGCTCTATGAACTCGCCACTAAAGGAACCATGCAAGGGGTGATAGAGAGGTACATGAAGTTCACCGGGGCGGCTCAGCCTGAAGAACCACCTACTACTGAACCACAGCATCATCCTCTGGATGCGAAAGAGGAAGCGGATGTGCTAAAACAGGAAATTGAAACATTGCAAAAGGGCATCAGTTATTTGTTTGGAGGAGGAATTGGGACAATGACAATGGATGATTTACATGTCTTAGAGAAGAATCTTGAGACTTGGATTTATCATATTCGCTCAATGAAGATGAATCTCATGTTACAAGAAATTCAAGATCTGAGAGACAAGGAGGGTACACTCAAAGCAGCAAACAAGTTTCTCCATGATAAGATTTTGGAGAATACAACTGCATTTACTAACTTTGCTCCATTTGCTACTGACTCAACTTACCCACTAACTATACAAGATGGGATTTTTCCAGCTCTAGGAAATGTACTTGGCTAA 636 0.4387 MARGRVQLKRIENPVHRQVTFCKRRAGLLKKAKELSILCDAEIGLVIFSAHGKLYELATKGTMQGVIERYMKFTGAAQPEEPPTTEPQHHPLDAKEEADVLKQEIETLQKGISYLFGGGIGTMTMDDLHVLEKNLETWIYHIRSMKMNLMLQEIQDLRDKEGTLKAANKFLHDKILENTTAFTNFAPFATDSTYPLTIQDGIFPALGNVLG 211
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc272111g00004 211 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
Stsc272111g00004 211 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Stsc272111g00004 211 ProSiteProfiles K-box domain profile. 91 181 IPR002487 GO:0003700|GO:0005634|GO:0006355
Stsc272111g00004 211 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Stsc272111g00004 211 PANTHER SERUM RESPONSE FACTOR HOMOLOG 3 151 - -
Stsc272111g00004 211 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Stsc272111g00004 211 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Stsc272111g00004 211 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Stsc272111g00004 211 Gene3D - 15 78 IPR036879 GO:0003677|GO:0046983
Stsc272111g00004 211 CDD MADS_MEF2_like 2 78 IPR033896 GO:0000977|GO:0045944
Stsc272111g00004 211 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 56 IPR002100 GO:0003677|GO:0046983
Stsc272111g00004 211 SUPERFAMILY SRF-like 1 76 IPR036879 GO:0003677|GO:0046983
Stsc272111g00004 211 Pfam K-box region 86 175 IPR002487 GO:0003700|GO:0005634|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc272111g00004 Stsc-Chr272111 44239 48834 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc272111g00004 1 203 MADS-box Gene Family AT1G71692 63.158 9.70e-84 246
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Stsc272111g00004 K-box 2.3e-22 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc272111g00004 - - gmx:100783345 308.916