Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc272111g00003 ATGAATAGTTATTGTGATGTTCCCCCGGGTTTTAGATTCCACCCGACGGATGAAGAACTTGTTGATTACTACCTTAGGAAGAAGGTTAATTCAAAGAAGATTGAGCTCGATGTAATCAAAGATGTTGATCTCTACAAAATTGAGCCATGGGACCTTCAAGAGATATGCAGGATAGGAAGAGAAGAGGAAAACGAATGGTATTTCTTTAGCCACAAAGACAAGAAGTATCCAACAGGAACAAGAACAAATAGGGCAACTGCAGCAGGGTTTTGGAAAGCAACTGGAAGAGACAAAGCCATATATTCAAAGCATGATCTGGTTGGGATGAGAAAGACGCTTGTCTTCTACAAAGGGAGAGCCCCCAATGGACAAAAGTCCGACTGGATCATGCATGAATATCGCCTTGAAACCGACGAGAATGCAGCACCACAAGAAGAAGGTTGGGTTGTGTGTAGAGTGTTCAAGAAGAGAGTAACCACCATGCGTAAATTGATGAGTAGTGATCATCATCATAATGATGATTCTTCTTGTTGGTATGATGATCAAGAATTCATGATGATGGAGTCACCACCAAAGATCAATCAGCAACCACAATCTTCTTCTATTCTTGTTCATCATCATCATCAATCCAATTTGATGCAGCCGCCACCGCCATATCCTCTCATCAAGAAAGAGCTTCTTCTTCACCCATCATCATCATCATCATCATCATCATACCCGTTCCTTCAGCTTCCACTCTTAGAGTCTCCTAAACTACTCCTTCATCAACAACAACAATCTTCGAATAATTCTATTAATGAACTCATGGTACCACCAATTGGAGGAGGAGAATTCTTGAATAATGAACAACAAGAAATGGAAGTGCTTGATTGGAGAGTTCTTGACAAGTTTGTTGCTTCACAGCTTAGTCAAGATGATCATCATAATCATAATCATGATGGATCCTCTATTAATATTATTGTACAAGATCATCATCATCTCACACAGGAAATTGTTATGGTGCCTACTACTCAAAATGCTGCTGCTGCATCAAACTCCCTCATCACCTCCCCAATTGATTTGTGGAAATAG 1071 0.4015 MNSYCDVPPGFRFHPTDEELVDYYLRKKVNSKKIELDVIKDVDLYKIEPWDLQEICRIGREEENEWYFFSHKDKKYPTGTRTNRATAAGFWKATGRDKAIYSKHDLVGMRKTLVFYKGRAPNGQKSDWIMHEYRLETDENAAPQEEGWVVCRVFKKRVTTMRKLMSSDHHHNDDSSCWYDDQEFMMMESPPKINQQPQSSSILVHHHHQSNLMQPPPPYPLIKKELLLHPSSSSSSSSYPFLQLPLLESPKLLLHQQQQSSNNSINELMVPPIGGGEFLNNEQQEMEVLDWRVLDKFVASQLSQDDHHNHNHDGSSINIIVQDHHHLTQEIVMVPTTQNAAAASNSLITSPIDLWK 356
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc272111g00003 356 Gene3D NAC domain 16 159 IPR036093 GO:0003677|GO:0006355
Stsc272111g00003 356 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 7 236 - -
Stsc272111g00003 356 FunFam NAC domain-containing protein 16 160 - -
Stsc272111g00003 356 ProSiteProfiles NAC domain profile. 7 156 IPR003441 GO:0003677|GO:0006355
Stsc272111g00003 356 Pfam No apical meristem (NAM) protein 8 135 IPR003441 GO:0003677|GO:0006355
Stsc272111g00003 356 SUPERFAMILY NAC domain 5 156 IPR036093 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc272111g00003 Stsc-Chr272111 35832 38181 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc272111g00003 1 306 NAC Transcription Factor Family AT1G62700 57.057 1.84e-118 346
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Stsc272111g00003 NAM 1.1e-38 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc272111g00003 - - gmx:100815845 377.096