Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc272111g00002 ATGAACATGGGGAAAACATTATTCCTGACATTGTTATTACTCTCATCAATTTTCACAATAGCAGCATCAAGAAAGAGATCATCATCATCATCTCATAAAAAATCAAACTTAGATTGGTGGTGCAACAGAACACCACACCCTGCACCATGCAAGTTCTACATGAGGCAAAGCCATTACAACCATTACCACAGGTTGAAGCACAGAACCGAGTTCCGTTCCATTCTCCTCAACTTGGCTCTTGACCAAGCCCTCCTCATGCAAAAACATGCACACACTCTGCAAAACAGTAACACCACTATGAAGCAGCAAACGGTGTTTGGTGATTGCTTGAAGCTCTATGATAACACCGTGTTCCACCTCAACCGCACCATTCAAGGCCTTAAATACCATCAAACAAGAAACTGTTCTGATTTCGATGCACAAACATGGCTCAGCACTGCCCTCACCAACATTGTAACTTGCAAGAAATGGGCCAATGCAATGAAGATCCCCGGCCTCACTGATTCTTCATGCCCAAGCAACAATGTCTCTGAGATCATAAGCAATACTCTGGCTGTGAACTCTGTGTTCTTGAAGTATCAGAAGAATCACTTAACGGAGGACTACACGGAGGCGGCGTTTCCGAGTTGGTTCTCGGCCACGGACAGGAGGCTGCTGCAGAGTTCAGGCGTGAAGGCGAACCTTGTGGTGGCGAGAGACGGTTCGGGGCATTTCAGGACGGTGCAGGGCGCGATCGATGCGGCGGCGAGGAGGAGGTCGAAGACGAGGTTTGTGATTCATGTGAAGAAGGGGGTTTATAGAGAGAACATTGAGGTTGATAAGACGAATGATAATATCATGCTGGTTGGTGATGGAATGAGAAACACCTTTATTGCCAGTGGAAGAAGCGTTCAACAAGGCTACACCACTTATAGCTCTGCCACTGCAGGAATTGATGGGCCTCACTTCATTGCACGTGACATCACCTTCATGAACACGGCGGGCCCACTCAAAGGCCAAGCCGTGGCGCTCCGATCCGCCTCCGATCTCTCCGTCTTCTACCGCTGCTCCATCATTGGCTACCAAGACACCCTCATGGCTCATGCCCAACGACAATTCTACAGAGGTTGTTACATCTACGGCACCGTTGACTTCATCTTTGGCAACGCCGCCGTTGTTTTCCAAAACTCCGTCATTCTCGTCAGGAGGCCCAATAATGGGCAGGCCAACATGATTACGGCCCAAGGTCGAGGCGACCCGTTCCAAAACACGGGAATCTCATTTCACAATTGCCAGATACGGGCCGCACCCGACCTCAAGCCCGTTGTTAACAAATATAACACGTTCTTAGGCCGGCCCTGGCAGCAATACTCAAGAGTTGTGGTTATGAAAACTTACATAGATAGCTTGGTAAGCCCAATGGGCTGGTCTCCATGGGGGAACACTAATTTTGCTCAGAGTACTTTGTACTATGGAGAGTATAAGAATTTTGGGCCTGGATCTTCCACTAAGAACAGGGTACGGTGGCCTGGGTATCATGTTTTGACAAGCCCGGCCCAGGCTACACCATTCACAGTAAACAGCCTCCTTGCTGGCGGCACATGGTTACCGGCTACCGGCGTGCCATTTACGGCTGGCCTTTGA 1623 0.4923 MNMGKTLFLTLLLLSSIFTIAASRKRSSSSSHKKSNLDWWCNRTPHPAPCKFYMRQSHYNHYHRLKHRTEFRSILLNLALDQALLMQKHAHTLQNSNTTMKQQTVFGDCLKLYDNTVFHLNRTIQGLKYHQTRNCSDFDAQTWLSTALTNIVTCKKWANAMKIPGLTDSSCPSNNVSEIISNTLAVNSVFLKYQKNHLTEDYTEAAFPSWFSATDRRLLQSSGVKANLVVARDGSGHFRTVQGAIDAAARRRSKTRFVIHVKKGVYRENIEVDKTNDNIMLVGDGMRNTFIASGRSVQQGYTTYSSATAGIDGPHFIARDITFMNTAGPLKGQAVALRSASDLSVFYRCSIIGYQDTLMAHAQRQFYRGCYIYGTVDFIFGNAAVVFQNSVILVRRPNNGQANMITAQGRGDPFQNTGISFHNCQIRAAPDLKPVVNKYNTFLGRPWQQYSRVVVMKTYIDSLVSPMGWSPWGNTNFAQSTLYYGEYKNFGPGSSTKNRVRWPGYHVLTSPAQATPFTVNSLLAGGTWLPATGVPFTAGL 540
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc272111g00002 540 Pfam Plant invertase/pectin methylesterase inhibitor 37 185 IPR006501 GO:0004857
Stsc272111g00002 540 NCBIfam pectinesterase inhibitor domain 8 188 IPR006501 GO:0004857
Stsc272111g00002 540 Gene3D Invertase/pectin methylesterase inhibitor family protein 31 190 IPR035513 -
Stsc272111g00002 540 SMART PMEI_2 32 186 IPR006501 GO:0004857
Stsc272111g00002 540 Pfam Pectinesterase 227 525 IPR000070 GO:0030599|GO:0042545
Stsc272111g00002 540 SUPERFAMILY Pectin lyase-like 222 539 IPR011050 -
Stsc272111g00002 540 FunFam Pectinesterase 221 540 - -
Stsc272111g00002 540 PANTHER PECTINESTERASE 18 530 - -
Stsc272111g00002 540 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 36 191 IPR035513 -
Stsc272111g00002 540 CDD PMEI-like_3 39 192 - -
Stsc272111g00002 540 ProSitePatterns Pectinesterase signature 1. 253 272 IPR018040 -
Stsc272111g00002 540 Gene3D - 221 540 IPR012334 -
Stsc272111g00002 540 ProSitePatterns Pectinesterase signature 2. 372 381 IPR033131 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc272111g00002 Stsc-Chr272111 20787 23007 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc272111g00002 36 540 Carbohydrate Esterase AT3G47400 58.090 0.0 606
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc272111g00002 K01051 - gmx:100816908 772.696