Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc272110g00005 ATGGGTAGCCTTGAAGCCGAAAGAACAACAGTTGGATGGGCAGCCAGAGACCCTTCTGGTGTTCTCTCTCCATACACCTACCCTCTCAGAAACACAGGCCCAGATGATGTTTTCATCAAAGTCCACTACTGCGGACTCTGCCATTCTGATATCCACCAAGTTAAAAACGACCTTGGTATGTCCAATTACCCCATGGTCCCTGGCCATGAGGTCGTCGGCGAGGTTCTCGAGGTTGGTTCCAATGTTACCAGGTTCAAAGTCGGAGAAATCGTGGGTGCTGGACTCCTTGTTGGCTGCTGCAAAACCTGCACCGCATGCCAATCTGATATAGAGAATTACTGCAGCAAGAAGATCTGGTCTTACAACGATGTTTACATTGATGGAAGACCCACTCAGGGTGGCTTCGCTGAACACATGATCGTTGAGCAAAAGTTTGTTGTGAAAATACCGGAGGGCATGGAGCCAGAGCAAGTTGCGCCGTTGTTGTGTGCAGGTGTGACTGTGTACAGTCCACTGGCTCACTTTGGGCTGAAGGAGAGTGGTCTGAGAGGTGGAATATTGGGGCTTGGAGGAGTTGGACACATGGGTGTGAAGATCGCTAAGGCACTGGGTCACCACATCACTGTGATAAGCTCTTCTGATAAGAAGAAGAAAGAAGCACTTGAGGATCTTGGTGCTGATAGCTACTTGGTTAGCTCTGATGCCACCAGCATGCAAGAAGCTGCAGATTCACTTGATTACATCATTGACACTATCCCTGTTGGACACCCTCTTGAGCCTTACCTCTCCCTTCTCAAGCTTGATGGCAAGTTGATCTTGATGGGTGTCATCAACACCCCTCTTCAATTTGTTAGCCCTATGGTCATGCTTGGGAGGAAGTCAATCACAGGAAGCTTCATTGGGAGCATGAAGGAGACAGAGGAGATGCTGCAATTCTGGAAGGAGAAGGAGCTTAGTTCCATGATTGAGATTGTCAAGATGGATTACATTAACAAAGCATTGGAAAGATTGGAGAAGAATGATGTGAGATATAGGTTTGTTGTGGATGTAAAAGGAAGCAAGCTTGACCAGTGA 1074 0.4767 MGSLEAERTTVGWAARDPSGVLSPYTYPLRNTGPDDVFIKVHYCGLCHSDIHQVKNDLGMSNYPMVPGHEVVGEVLEVGSNVTRFKVGEIVGAGLLVGCCKTCTACQSDIENYCSKKIWSYNDVYIDGRPTQGGFAEHMIVEQKFVVKIPEGMEPEQVAPLLCAGVTVYSPLAHFGLKESGLRGGILGLGGVGHMGVKIAKALGHHITVISSSDKKKKEALEDLGADSYLVSSDATSMQEAADSLDYIIDTIPVGHPLEPYLSLLKLDGKLILMGVINTPLQFVSPMVMLGRKSITGSFIGSMKETEEMLQFWKEKELSSMIEIVKMDYINKALERLEKNDVRYRFVVDVKGSKLDQ 357
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc272110g00005 357 FunFam Cinnamyl alcohol dehydrogenase 164 320 - -
Stsc272110g00005 357 Pfam Alcohol dehydrogenase GroES-like domain 34 149 IPR013154 -
Stsc272110g00005 357 ProSitePatterns Zinc-containing alcohol dehydrogenases signature. 68 82 IPR002328 GO:0008270|GO:0016491
Stsc272110g00005 357 FunFam Putative cinnamyl alcohol dehydrogenase 6 321 350 - -
Stsc272110g00005 357 FunFam probable cinnamyl alcohol dehydrogenase 13 170 - -
Stsc272110g00005 357 CDD CAD1 11 349 IPR047109 GO:0016616
Stsc272110g00005 357 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 154 318 IPR036291 -
Stsc272110g00005 357 SMART PKS_ER_names_mod 20 348 IPR020843 GO:0016491
Stsc272110g00005 357 PANTHER ALDEHYDE REDUCTASE 7 352 IPR047109 GO:0016616
Stsc272110g00005 357 Pfam Zinc-binding dehydrogenase 191 312 IPR013149 -
Stsc272110g00005 357 SUPERFAMILY GroES-like 16 181 IPR011032 -
Stsc272110g00005 357 Gene3D - 164 320 - -
Stsc272110g00005 357 Gene3D - 13 350 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc272110g00005 Stsc-Chr272110 58453 60571 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc272110g00005 1 355 Monolignol Biosynthesis Gene Families AT3G19450 76.124 0.0 514
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc272110g00005 K00083 - gmx:100777558 626.706