Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc272108g00001 ATGGCTATGTTCTTCACGGAGTTGTATTCTTCCGAAACTCGTAAACTAATTGAACGACTCGTTAATTATATCATTTACAAGGGGACATTTCTACCACTGATTGTGCCACCGACAGTATATCAGGCTGGTCTTTGGTCAACATGGCTGACTGTGCTCTGCTCTTTAAAGATGTTTCAAGCTTTGGCTAGAGATCGTTTGGAGCGGCTGAATGCATCTCCATCTGTGACACCTTGGACATATCTTCGTGTATATTCAGCATTGTTATTCGTTTTCTTCGTTGATGTTTTCTGGATAAGGTTTTGTCTGGGGGTATATAGAAGCGATGGGTCACCTCTGCATCTGTTACTATTCTTTGAGCCTTTAAGTATTGCTTTTGAGACACTACAGGCCATTTTGGTGCATGGATTCCAGTTGCTTGACATATGGCTTCCTCATTCAGCTTGCAACAGCAGTGATTGTCGAATGCCTAAACTGTTTAATACCCTAACATCAGGTGTCTTACTGGAATGGAAGGGAACTCTTATTCGGAACTTCGGGTTTTTCTTAGATATGGCAACATTTTTAATGGCACTTGGCCATTACCTGTACATATGGCGTCTTCATGGGATGGCTTTTCATCTAGTAGACGCAGTGCTCTTTCTAAACATACGGGCCTTGCTTAGTGCAATTATAAATCGTATAAAAAGCTTTCATAGGTTAAGGATAGCTCTAGGAGCACTCAATGCTGCTCTTCCTGATGCGACAGATGAGGAGTTAAGAGCATATGATGATGAATGTGCTATTTGTAGAGAATCCATGGCTAAGGCAAAAAGGTTAAACTGCAATCACCTTTTCCATCTAGCATGTTTGAGATCTTGGTTGGATCAAGGCCTGACTGAGATGTATACTTGTCCCACATGCCGAAAGCCTCTTTTCCCAGGCCGGTCAGAAAATGAAACAAATTCCAATGTAGGGGGAATATCTAGTGACGAGCAACTGGTACGGAATACAAATGCAGGACTGGATCGGCAGAACTCCGCCAGAAATACCATGCCTGCAGTATTGTATCCCAATCATATACCAAACACGGCAGAGAATGCCCCTTGGAGGGGTGCAGGACTGGACTCAGGCTGGTTGCATTCTTGGCCAAATCAGGGTATTGATGGAGCTGGTCCATCATCTACAACAATCAGAACAGTTGGATTAGGAAGAGTTCAAATGATGATGAGGCAGCTAACTTCTGTGGGAGAAACCTATGCCCAGGGTGCCTTTGAAGATGCTTCCTGGAGCCTCTGGCCTATTAATCCCTCCCAGGCTTCTTCTAGTAATCCTACCATTTCTGCTGGTGAAAGGCTGCCAGTAGGAGCAGGTAGCTTACATAGAAGAGCTGTTTCACAATCTTCAAATGATAATATGGCAAATATTCTTGCTATGGCCGAAACTGTTCGGGAGGTTTTACCTCATATTCCAGATGACATAATATTCCAGG 1468 0.4353 MAMFFTELYSSETRKLIERLVNYIIYKGTFLPLIVPPTVYQAGLWSTWLTVLCSLKMFQALARDRLERLNASPSVTPWTYLRVYSALLFVFFVDVFWIRFCLGVYRSDGSPLHLLLFFEPLSIAFETLQAILVHGFQLLDIWLPHSACNSSDCRMPKLFNTLTSGVLLEWKGTLIRNFGFFLDMATFLMALGHYLYIWRLHGMAFHLVDAVLFLNIRALLSAIINRIKSFHRLRIALGALNAALPDATDEELRAYDDECAICRESMAKAKRLNCNHLFHLACLRSWLDQGLTEMYTCPTCRKPLFPGRSENETNSNVGGISSDEQLVRNTNAGLDRQNSARNTMPAVLYPNHIPNTAENAPWRGAGLDSGWLHSWPNQGIDGAGPSSTTIRTVGLGRVQMMMRQLTSVGETYAQGAFEDASWSLWPINPSQASSSNPTISAGERLPVGAGSLHRRAVSQSSNDNMANILAMAETVREVLPHIPDDIIFQ 489
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc272108g00001 489 FunFam E3 ubiquitin protein ligase RIN2 232 311 - -
Stsc272108g00001 489 SUPERFAMILY RING/U-box 245 307 - -
Stsc272108g00001 489 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 232 310 IPR013083 -
Stsc272108g00001 489 Pfam Ring finger domain 257 301 IPR001841 -
Stsc272108g00001 489 SMART ring_2 259 300 IPR001841 -
Stsc272108g00001 489 ProSiteProfiles Zinc finger RING-type profile. 259 301 IPR001841 -
Stsc272108g00001 489 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF8 3 489 - -
Stsc272108g00001 489 CDD RING-H2_AMFR 257 304 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc272108g00001 Stsc-Chr272108 408 7393 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc272108g00001 14 342 C3H Transcription Factor Family AT3G16090 27.920 3.49e-27 112
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc272108g00001 K10636 - gmx:100819656 813.913