Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc272106g00006 ATGGCTTCTCTCTCGCTTCAACTGCTGCTTTTCAGTTTCATCACTCTCACAATAATCCATGCGACAAAGGTGACATGTGCAGCACCCTACCATCACCGTAGCACCCTTAGAACCTTGTCTACTTCTTCTTCTACCAATTCCTCCTCCAATAATCATCGTCGGAACCACACTTGGGTGGGACCAATAGGTCACCGGGTAATCACCGTTGACGTAAACGGCGGTGGACAGTTCCGGTCGGTGCAAGCTGCCGTGAATGCCGTACCAGACAACAATAGAATGAACGTGCTCATCCAAATCAGCCCCGGATACTACATAGAGAAGGTTGTTGTGCCCGTGACGAAGCCGTACATAACATTTGAAGGAGCGGGAAAAGAAGTGACGGTGATAGAATGGCATGATAGGGCCAGTGACCCTGGTCCCAACGGACAGCAACTTCGTACTTACAGAACTGCTTCTGTCACTGTTTTTGCCAACTATTTCTCTGCTCGCAATATCAGCTTCAAGAACACAGCGCCGGCACCAATGCCCGGTATGCAAGGTTGGCAAGCCGCCGCGTTTCGAATATCCGGTGACAAAGCATACTTCTCAGGCTGTGGATTCTACGGAGCACAAGACACTCTTTGCGACGACGCTGGCAGGCATTACTTCAAGGACTGCTATATTGAGGGTTCCATTGATTTCATTTTTGGGAATGGCAGATCCATGTACAAGGATTGCCAGCTACACTCAATAGCAACGAGATTCGGTTCCATAGCAGCCCATGATAGGAGGCATGAAGAAGAGAAGACGGGCTTTGCATTCGTGAGATGCAGGGTGACGGGCACAGGCCCGCTCTATGTGGGAAGAGCCATGGGCCAGTACTCCAGAATTGTCTACTCTTATACTTATTTCGATGACATTATTGCTCATGGCGGTTGGGATGATTGGGACCATGCCAACAATAAGAACAAGACTGTGTTCTTTGGAATGTACAAGTGTTGGGGACCAGGAGCAGAGGCAGTACGTGGGGTGTCATGGGCCAGAGAGTTGGATTTCGAATCTGCCCACCCATTTCTCGTCAAGAGCTTCGTCAATGGCAGACATTGGATTGCACCTTCTGATGCTTAG 1107 0.4959 MASLSLQLLLFSFITLTIIHATKVTCAAPYHHRSTLRTLSTSSSTNSSSNNHRRNHTWVGPIGHRVITVDVNGGGQFRSVQAAVNAVPDNNRMNVLIQISPGYYIEKVVVPVTKPYITFEGAGKEVTVIEWHDRASDPGPNGQQLRTYRTASVTVFANYFSARNISFKNTAPAPMPGMQGWQAAAFRISGDKAYFSGCGFYGAQDTLCDDAGRHYFKDCYIEGSIDFIFGNGRSMYKDCQLHSIATRFGSIAAHDRRHEEEKTGFAFVRCRVTGTGPLYVGRAMGQYSRIVYSYTYFDDIIAHGGWDDWDHANNKNKTVFFGMYKCWGPGAEAVRGVSWARELDFESAHPFLVKSFVNGRHWIAPSDA 368
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc272106g00006 368 PANTHER ACYL-COA THIOESTER HYDROLASE YBHC-RELATED 62 364 - -
Stsc272106g00006 368 Gene3D - 63 367 IPR012334 -
Stsc272106g00006 368 MobiDBLite consensus disorder prediction 37 56 - -
Stsc272106g00006 368 Pfam Pectinesterase 67 359 IPR000070 GO:0030599|GO:0042545
Stsc272106g00006 368 MobiDBLite consensus disorder prediction 37 57 - -
Stsc272106g00006 368 FunFam Pectinesterase 62 365 - -
Stsc272106g00006 368 ProSitePatterns Pectinesterase signature 2. 221 230 IPR033131 -
Stsc272106g00006 368 SUPERFAMILY Pectin lyase-like 64 365 IPR011050 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc272106g00006 Stsc-Chr272106 59124 61494 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc272106g00006 4 368 Carbohydrate Esterase AT5G47500 72.131 0.0 555
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc272106g00006 - - cam:101501763 644.425