Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc272106g00005 ATGGAGAGGCACAAATGCAAGCTTTGTTCCAGGACATTCGCCAATGGCAGAGCTCTTGGTGGTCACATGAAGGCTCACTTAGCCACCCTTCCTCTCCCTCCGAAGCCTCATCAACAACCGCAACCACCTTCTTTTCAGTACTCCTCTTATTCAGAATCAGAACATGATGATGATGATGGTGATGGTGATGAAGATGATGAAGAAAAAGGTTATGGATTAAGAGAGAACCCAAAGAGAAGCTTCAGGGTTGCAGATCCTGAATTCTCGTTCCCTGCTGCTGATGCTACTGCTGTGGTCCAAGACAGAGAGAGCGAGACTGAGTCAAAGACCAACCCGACTCGGACACGAAGACGATCCAACCGTACACGAAAATCATCCATTGCCAACCTTACTACCAACAAGAGGACCAAGCTCATGAGTTTCATGGAGTCACCACCACCACCAGAGGCAGCTGAACCTGTTAGCTCTGTTTCCGATACTTCGCCGGAAGAAGACCTGGCCATGTGCCTCATGATGCTGTCAAGGGACAAATGGAGGAAGACGAGTGTTGAAGAAGGAGAAGAAGAGATGAAGTTGAGGAACAATAATAATAAGAAGAAGGTTCGAGGGAAGCATCATCATCATCATCTTCAGTGTGACAAGTGTGGGAAAACGTTTCGATCTTCAGGGGCATTGGGGAGCCACAGAAGCATATGCCTCTGTGATGAAGCTGATGGAAGTGACAGAATCTTCCAATGCCCGTATTGTTCAAAGGTTTTCGGGTCGGGTCAAGCTCTCGGTGGCCATAAGAGATCTCACCTTCTTCCATCTTCTTCTTCTGTTATCAATGCTAACCATAATAATCTTAGATTGAAACAACAAAGCTTCATAGATCTCAACATGCCTGCTCCACCTGAAGAAGACGACCTTAGTGTTCTATCTGATGCATAA 930 0.4645 MERHKCKLCSRTFANGRALGGHMKAHLATLPLPPKPHQQPQPPSFQYSSYSESEHDDDDGDGDEDDEEKGYGLRENPKRSFRVADPEFSFPAADATAVVQDRESETESKTNPTRTRRRSNRTRKSSIANLTTNKRTKLMSFMESPPPPEAAEPVSSVSDTSPEEDLAMCLMMLSRDKWRKTSVEEGEEEMKLRNNNNKKKVRGKHHHHHLQCDKCGKTFRSSGALGSHRSICLCDEADGSDRIFQCPYCSKVFGSGQALGGHKRSHLLPSSSSVINANHNNLRLKQQSFIDLNMPAPPEEDDLSVLSDA 309
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc272106g00005 309 MobiDBLite consensus disorder prediction 67 82 - -
Stsc272106g00005 309 ProSitePatterns Zinc finger C2H2 type domain signature. 6 26 IPR013087 -
Stsc272106g00005 309 PANTHER ZINC FINGER PROTEIN ZAT1-RELATED 1 308 IPR044303 GO:0006355
Stsc272106g00005 309 Gene3D Classic Zinc Finger 207 266 - -
Stsc272106g00005 309 SUPERFAMILY beta-beta-alpha zinc fingers 3 229 IPR036236 -
Stsc272106g00005 309 SMART c2h2final6 210 230 IPR013087 -
Stsc272106g00005 309 SMART c2h2final6 244 266 IPR013087 -
Stsc272106g00005 309 SMART c2h2final6 4 26 IPR013087 -
Stsc272106g00005 309 ProSitePatterns Zinc finger C2H2 type domain signature. 246 266 IPR013087 -
Stsc272106g00005 309 ProSiteProfiles Zinc finger C2H2 type domain profile. 244 266 IPR013087 -
Stsc272106g00005 309 Pfam Zinc finger, C2H2 type 211 230 IPR013087 -
Stsc272106g00005 309 Pfam C2H2-type zinc finger 3 28 - -
Stsc272106g00005 309 Pfam C2H2-type zinc finger 244 266 - -
Stsc272106g00005 309 ProSiteProfiles Zinc finger C2H2 type domain profile. 4 31 IPR013087 -
Stsc272106g00005 309 MobiDBLite consensus disorder prediction 100 114 - -
Stsc272106g00005 309 SUPERFAMILY beta-beta-alpha zinc fingers 241 267 IPR036236 -
Stsc272106g00005 309 ProSiteProfiles Zinc finger C2H2 type domain profile. 210 231 IPR013087 -
Stsc272106g00005 309 MobiDBLite consensus disorder prediction 28 128 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc272106g00005 Stsc-Chr272106 53905 55032 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc272106g00005 1 306 C2H2 Transcription Factor Family AT3G60580 35.821 1.43e-47 159
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Stsc272106g00005 zf-C2H2_6 1.9e-07 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc272106g00005 - - aip:107643045 457.988