Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc272106g00004 ATGGCGATGATGGAAATGAGAAATAAGAGGGTGGTGGAAGATGTTGTAATAATGGGAGGGTTGATCGGAGTCCAATTTATCTACGCAGGGAACGCTTTGCTGATGAGTTATGCTATGTCATTAGGCCTCACCTCTCTTACACTTGTTACTTTTACTTCCCTAGCTACATTCATTGTTCTCTTCCCCGTTGCCTTTTATTTTGAAAGGACTAAGTGGCCCAAGGATTGCAAACTCAAGCTGATTATGCAACTCTTGTTTCTTTCTTTTGGAGGACTAGCTTTCCAATGTCTGTTCCTCAAGGGAATCAATCTAACTTCACCAGCAATGGGAACAGCAATGCCAAACCTTGCACCAGGTCTTATCTTTCTCATCGCGTGGACTTTTGGGTTGGAGGAAGTGAACTTAAGGAACACACACAGCAAAGTGAAAATCTTAGGAACACTGCTCTGTGTTCTTGGGGCTCTCACAATGAGCATAATGCAAAGCATTTCTGCTCCTCCAGAAACTGGTTTGGAGGCTACAGGTCAATTATCGTCGAGGGCATCAGAGTTCGTCTTTGACAAGCACAAGATCATTGGCAGCCTCTATCTTGTGGCCGCAGTCTTGATTCTGTCAAGCAGCATTGTCCTGCAGGCTTTTATTCTTGGAGATTTTCCAGCACCTATGTCCTTGGGTGCAATAACGTCCTTGTTAGGGGCATTCATGACCGCAGTTGTTCAGTTACTTACAGAGCACCAAGTGAAACCTGATTGGCGAGTTCTAAGTTTTAGAGACCTAATTGGCTATTCTCTTATGGCAGGTGCAGCAAGTGGAATATGTTTAAGCTTCAACGGTTGGGCACTTAAGAAGAAAGGACCAGTCTTGGTCTCTATGTTTAGCCCCATTGCTACAGTCTGCTCTGTCATTTTCTCCTTTGTTACCATGGGAGACACCATTAATTTTGGAAGCATTGCAGGTATGTTACTCGTGTTCACTGGCCTGTACTTAGTTCTTTGGGCCAAAGACAAAGAAGGCCACGCAAAAGGAAATAATGGCATAGAGACTGAGAAGGCTTTTTTAAGTTGA 1065 0.4394 MAMMEMRNKRVVEDVVIMGGLIGVQFIYAGNALLMSYAMSLGLTSLTLVTFTSLATFIVLFPVAFYFERTKWPKDCKLKLIMQLLFLSFGGLAFQCLFLKGINLTSPAMGTAMPNLAPGLIFLIAWTFGLEEVNLRNTHSKVKILGTLLCVLGALTMSIMQSISAPPETGLEATGQLSSRASEFVFDKHKIIGSLYLVAAVLILSSSIVLQAFILGDFPAPMSLGAITSLLGAFMTAVVQLLTEHQVKPDWRVLSFRDLIGYSLMAGAASGICLSFNGWALKKKGPVLVSMFSPIATVCSVIFSFVTMGDTINFGSIAGMLLVFTGLYLVLWAKDKEGHAKGNNGIETEKAFLS 354
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc272106g00004 354 Pfam EamA-like transporter family 192 331 IPR000620 GO:0016020
Stsc272106g00004 354 Pfam EamA-like transporter family 22 158 IPR000620 GO:0016020
Stsc272106g00004 354 SUPERFAMILY Multidrug resistance efflux transporter EmrE 252 336 - -
Stsc272106g00004 354 PANTHER WAT1-RELATED PROTEIN 20 338 IPR030184 GO:0016020|GO:0022857
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc272106g00004 Stsc-Chr272106 45469 47706 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc272106g00004 1 341 Nodulin-like Gene Family AT5G47470 55.233 4.71e-129 373
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc272106g00004 - - aprc:113870214 473.781