Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc272104g00001 ATGGAACAACAACAACATTCATCATCAGCAAACAGCAACAACAATAACGGTACAAGTAATCACATGAACAGTAGCAGCAGGCAAAGCAGCACAAGGTGGACACCAACAACGGATCAGATAAGGATACTGAAGGATCTATACTACAACAATGGGGTAAGGTCTCCAAGTGCAGAACAGATTCAGAGGATCTCTGCTAGGCTTAGACAGTACGGCAAGATTGAAGGCAAGAATGTCTTCTACTGGTTCCAGAATCACAAGGCCCGGGAGAGGCAGAAGAAGAGATTCACCTCTGATTCTACTACTAATACCACCAATGCCAATAATCTCCCACTTCCAACCATGCATAGAGGATCCACCATTAACAACAACAACAATGCTCCTAAGTATTGGAATAAACCTACTGAGGACACTACCACTACCACTACTCCTACCTTTCACAACAAGTATAACATGTCATCATCAACTGGGATTGCTTCTTCTTCTTCTGCTGTGGGCCAGATGGGGAATTATGGTCATGGATCTGTTCCCATGGGGAAGAGTTTTAATAGGGAGGGCACAATAATATCTGCAGCTGGAGGAAGCAGTGTTTGTGGTGCCATCAACCAGAACCTGCTGGGATGGGTTGGTGTGGACCCTTATTCTTCAACTTACACTCCTTCCTTTGACAAAATAACTCCTGAGAGTGAAACCCTTGAACAAGAACAAGGTGATGATGATGAAATGGATGATGTCACTGAGATTGAAACCCTGCCTTTGTTCCCTATGCGTGGCGAAGACATCCATGGCGGCTATTTCAGCCTCAGATCCAATTCTTCTTCTTCTTCTTCTTCTTTTAACTATGATCTTCATCACGGATTCAACAACGGTGGTTCCCGTGCTTCATTGGAGCTTAGTCTCAATTCCTATGCTCGCAAATCTCCAGATTACGCTTGA 933 0.4427 MEQQQHSSSANSNNNNGTSNHMNSSSRQSSTRWTPTTDQIRILKDLYYNNGVRSPSAEQIQRISARLRQYGKIEGKNVFYWFQNHKARERQKKRFTSDSTTNTTNANNLPLPTMHRGSTINNNNNAPKYWNKPTEDTTTTTTPTFHNKYNMSSSTGIASSSSAVGQMGNYGHGSVPMGKSFNREGTIISAAGGSSVCGAINQNLLGWVGVDPYSSTYTPSFDKITPESETLEQEQGDDDEMDDVTEIETLPLFPMRGEDIHGGYFSLRSNSSSSSSSFNYDLHHGFNNGGSRASLELSLNSYARKSPDYA 310
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc272104g00001 310 Pfam Homeodomain 30 91 IPR001356 GO:0003677
Stsc272104g00001 310 SUPERFAMILY Homeodomain-like 11 93 IPR009057 -
Stsc272104g00001 310 PANTHER WUSCHEL-RELATED HOMEOBOX 1-RELATED 12 276 IPR044555 GO:0003700|GO:0099402
Stsc272104g00001 310 MobiDBLite consensus disorder prediction 91 147 - -
Stsc272104g00001 310 CDD homeodomain 31 93 IPR001356 GO:0003677
Stsc272104g00001 310 MobiDBLite consensus disorder prediction 97 147 - -
Stsc272104g00001 310 SMART HOX_1 28 96 IPR001356 GO:0003677
Stsc272104g00001 310 Gene3D - 22 91 - -
Stsc272104g00001 310 ProSiteProfiles 'Homeobox' domain profile. 26 92 IPR001356 GO:0003677
Stsc272104g00001 310 MobiDBLite consensus disorder prediction 1 35 - -
Stsc272104g00001 310 MobiDBLite consensus disorder prediction 219 239 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc272104g00001 Stsc-Chr272104 157 1769 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc272104g00001 25 263 Wox Gene Family AT2G17950 40.449 2.70e-46 156
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-WOX Stsc272104g00001 Homeodomain 1.3e-17 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc272104g00001 - - adu:107488063 410.223