Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc272103g00002 ATGGGGTTTTTGTTGAAGGAAGCTCTCAAGACTCTCTGTGCTCGGAACCAATGGTCTTATGCGGTGTTTTGGAAGATCGGATGTAATAATTCCAAGCTGTTGATCTGGGAAGATTGCTACTATGAATTGTTGCCGACTCCTTTCCCGGCAAGCGTTTCCGGGGTGTCTAATTTGCCTTACCAAGATGGGGACAGAAGCTGGTTTTCTTCGCTGGGGATTCAGGAAGAGGACAGAGTCTGTTCTTTGATTAACAAAATGATGGTGAATAATTCGGTCAATATAGCTGGTGAAGGGATAATTGGACGGGCAGCATTTATGGGAAAGTACCAGTGGATTCTTTTGAACAATTTAACAAGAAATGCATATCCACCAGAGGTGTATACTGAGATTCATCAGCAATTCTCAGCTGGAATTCAGACAATAGTGGTTATTCCTGTGCTTCCGCATGGTGTTGTTCAACTTGGTTCTTTTTTACCAATAATGGAAAATATTGGATTTGTGAATGATGTGAAGAGCTTGATCTTGCAATTGGGATGTGTTCCTGGTGCCCTTTTATCTGATGACTACTCAGCAAAACATTCTACCGGAAGTCTTACTAGACCTTCTAATGTCGGAGTACCTGCGTCTGTCGATCCACCTGTAATTTCCCCAAACTGCCCTCCTTTGGTAGCCGGTAGCTCCAACCAAGCAAGTTATTCATCTCATATCCCAAAGCCTATTGTTCAACCCATAAATGGTTACCAAGGTTCCATATTGAAACCTCAAAGCCGTAACATAAACCAGATATCATCCTCAATAAATGAAACAGCCGTCAGTGGCCAACAAGAGAGTATGGTTGTGAAGGCTGAAGCTGAATTGATGCCGTCAAATTTCGATTCATGCTTTCAAAAGCAATCCGTTTCTTATAATACAAGATCTGCATACAATGATTTAGCCACTTTCGGCCAACCGAGTCTCAGTGATTGCAGCCTTAAATACATGGAACATCAAATCTTATCTGGAGTTGGGAGAAAAAGTCATGTTAGTCCTAATATGAACACATCAAGAAGCTTTAATATGACTCAACCAAAAACAAATAGCAGCAGCCGTATTCTTGGACATGTCCAGAGTTCTGCAAATACATCAGTACTTGGAGGAGTCCCAACATCTGGTGGGATGACTAATTTCGGACCGGTTTCAAGCCTTTCGAAAGTATCCACTGCAGAGTTTTCTTTACCACAAAATGTTGGGGTCGGACTTCAAAATGGTAGATCAACTAGAGCTGGCATGCATTCCGTGTCGAGTTTGACCAATCAATCAGTAACCAGTCACATGCCTCCAGAAGGTTCTGATCAGAAGAATGTTGATTTAAAGCGTGCATATGATGCACTGGCCTCGTTGGATCAAGGGTTAGATGATGTAATGCTTCAGGACCTTAAAATCCCATCTCTTCATATTGAGGAGCATGTATCCATGAATGATCACATCTCGGGGTTTTTTGGTGATTGTCTCATTAAGGATGCTGCTAATCAACATGTGATGAAAAATGCTAAACATGAAGAAGCTTGCACTCGACCTCCACCGGGTGATGACCTCTTTGATGTTTTAGGTGCAGATTTCAAAATGAAACTGCTAAATGGAGACTGGAATAAGTTGCTTGCTGATGAACTAGATGGTGATGCTGAAAATCTTGATAACAAGACAACATATATGAATATGCAGGTAGCTCCACCACTTCATAATAGTTCGACAAGCGAAGCAATATCAAGCAGTGATATCATCTCCGGGACATGCACTGACAACCTCTTAGATGCGGTGGTCTCAAAGGCTCAATCTTCTTCTGCCATGAAACAGAACTCTGATGACATGTCATGCAGGACAACAGTGACAAGGACTAGTACCTCCTCAACTCCCTCTCCGGCCGGCAAACAAGTTTTGTTTGATGTTCCCAAGACTGGGGACAAGATAAAGTCGGCCGAAACTAGTTCCGTTAGGTCTGGTTGTGGCAAGGCTAATTCTGGAAACTGTGCTCAAGCCACTTCCATCTATGGATCTCAACTTAGTTCCTGGATTGAGAATGGGAGCCGTGTGAAGCGTGAGAACAGTGTTTCAACTGGATACTCTAAGCGACCGGATGAAGGTAAATCGAACCGTAAAAGGCTCAAGCCTGGAGAGAACCCCCGCCCTCGACCCAAAGATCGCCAAATGATTCAGGATCGTGTGAAAGAGTTGCGCGAAATTGTGCCAAATGGAGCAAAATGTAGCATAGATTCACTGTTGGAGAGGACTATCAAGCACATGCTTTTCTTGCAAAGTGTGACAAAACATGCTGACAAGCTGAAACAAACTGGGGAGTCTAAGATTATTAGCAAGGAAGGTGGATTGCTCTTGAGAGATAACTTCGAGGGAGGAGCGACATGGGCATATGAGGTTGGTTCACAGTCAATGGTTTGCCCTATCATAGTTGAAGATCTGAGTCCTCCGCGACAGATGCTAGTTGAGATGCTTTGCGAGGAGCGCGGCTTCTTTCTCGAAATAGCCGACTTAATCAGAGGACTAGGCTTAACCATCTTAAAGGGTGTCATGGAAACTCGGAACGACAAGATTTGGGCACGCTTTGCTGTTGAGGCAAACAGGGATGTAACAAGGATGGAAATATTCATGTCGCTGGTTCGTCTTCTAGAGCAAACAGTGAAGGGAAATGCCTCTTCATCCAATGCAGTTGACAACAACATGATGACTTATCATTCTTTCCCACAAGCTACCCAGATACCGGCGACCGGTATGCCTGCTAGTTTGCAATGA 2784 0.4371 MGFLLKEALKTLCARNQWSYAVFWKIGCNNSKLLIWEDCYYELLPTPFPASVSGVSNLPYQDGDRSWFSSLGIQEEDRVCSLINKMMVNNSVNIAGEGIIGRAAFMGKYQWILLNNLTRNAYPPEVYTEIHQQFSAGIQTIVVIPVLPHGVVQLGSFLPIMENIGFVNDVKSLILQLGCVPGALLSDDYSAKHSTGSLTRPSNVGVPASVDPPVISPNCPPLVAGSSNQASYSSHIPKPIVQPINGYQGSILKPQSRNINQISSSINETAVSGQQESMVVKAEAELMPSNFDSCFQKQSVSYNTRSAYNDLATFGQPSLSDCSLKYMEHQILSGVGRKSHVSPNMNTSRSFNMTQPKTNSSSRILGHVQSSANTSVLGGVPTSGGMTNFGPVSSLSKVSTAEFSLPQNVGVGLQNGRSTRAGMHSVSSLTNQSVTSHMPPEGSDQKNVDLKRAYDALASLDQGLDDVMLQDLKIPSLHIEEHVSMNDHISGFFGDCLIKDAANQHVMKNAKHEEACTRPPPGDDLFDVLGADFKMKLLNGDWNKLLADELDGDAENLDNKTTYMNMQVAPPLHNSSTSEAISSSDIISGTCTDNLLDAVVSKAQSSSAMKQNSDDMSCRTTVTRTSTSSTPSPAGKQVLFDVPKTGDKIKSAETSSVRSGCGKANSGNCAQATSIYGSQLSSWIENGSRVKRENSVSTGYSKRPDEGKSNRKRLKPGENPRPRPKDRQMIQDRVKELREIVPNGAKCSIDSLLERTIKHMLFLQSVTKHADKLKQTGESKIISKEGGLLLRDNFEGGATWAYEVGSQSMVCPIIVEDLSPPRQMLVEMLCEERGFFLEIADLIRGLGLTILKGVMETRNDKIWARFAVEANRDVTRMEIFMSLVRLLEQTVKGNASSSNAVDNNMMTYHSFPQATQIPATGMPASLQ 927
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc272103g00002 927 PANTHER TRANSCRIPTION FACTOR BHLH155-LIKE ISOFORM X1-RELATED 1 921 IPR043561 GO:0003700|GO:0006355
Stsc272103g00002 927 MobiDBLite consensus disorder prediction 696 729 - -
Stsc272103g00002 927 MobiDBLite consensus disorder prediction 607 635 - -
Stsc272103g00002 927 MobiDBLite consensus disorder prediction 607 639 - -
Stsc272103g00002 927 MobiDBLite consensus disorder prediction 688 729 - -
Stsc272103g00002 927 CDD bHLH_AtLHW_like 718 787 - -
Stsc272103g00002 927 Pfam bHLH-MYC and R2R3-MYB transcription factors N-terminal 5 173 IPR025610 -
Stsc272103g00002 927 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 714 763 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc272103g00002 Stsc-Chr272103 10983 15917 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc272103g00002 523 902 Basic Helix-Loop-Helix Transcription Factor Gene Family AT2G27230 53.368 3.07e-116 368
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc272103g00002 - - aip:107629784 1463.36