Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc272100g00009 ATGGAAGAGGAGAAGGAAAATAGTACATCAACCACCCCGCCTCGATCAGTTATTCCCCCTTCTATTGTACCCCCTTTAGCTCCAATTCCTCCGGTCCGGCCACCCATGCTGCAAAACAGTGAGGTTGGGCCCAGTGACTCTGATTCAGATCACAATGAATTGGGCACTGGAATTAACAAGGGTGCAGGGGAGTATGAGATATCAGAAGAGAGTAGACAAGTAAGAGAGCGCCAAGAAAAGGCAAGGCAAGAACTCATGCTTAAGAGGCGTGCTGCTGCCCTTGCTGTTCCCACAAATGACATGGCTGTGCGAGCTCGTCTTCGCCGCCTTGGCGAGCCTATAACTCTCTTCGGTGAGAGGGAGATGGAGAGGAGAGACAGGTTGCGGATGATTATGGCAAAGCTGGATGCCGAAGGTCAGCTTGAGAAGCTGATGAAAGCTCATGAGGAGGAAGAGGCAGCAGCTTCTATTTCAAGGGATATGGCTGAAGAAGAACTAGAGTATCCTTTCTACACTGAAGGATCACATTCTCTTCAGAATGCCAGAATTGACATTGCTAAATATTCTTTAGCTAGAGCAGCATCACGTCTTCAACGTGCCAAGAGGAAAAGGGATGATCCGGATGAAGATGTGGATGAAGAGATTAACTGGGCATTCAACCCGGCTGGAAATTTCAGTCTTGAATTTAGTGAAGTCGGAGATGATCGACCACTTTCTGGTTGCTCCTTTTCTCCAGATGGAACACAGCTTGCTACCTGTTCCCTAACCGGATCAGCCAAGTTGTGGACCATGCCTGACATAAGAAAAGTTTCTACTTTGAAAGGCCACACAGAGCGTGCTACCGATGTTGCTTATTCTCCTGTGCATAATCATGTAGCAACTGCATCTGCTGACCGGACTGCAAGATATTGGAATGATCAGGGAACCCTATTGAGGACATTTGAAGGTCATCTTGACCGTCTTGCGCGCATTGCCTTCCATCCATCAGGGAAATACCTGGGTACTACTAGCTTTGATAAGACGTGGAGATTATGGGACGTCGAAACAGGCGAGGAGTTGCTTCTTCAAGAAGGTCATAGTAGAAGTGTATATGGTTTGGCTTTCCATCATGACGGATCATTAGCTGCATCTTGTGGACTGGATTCTCTAGCCCGTGTTTGGGATCTTAGAACCGGAAGAAGTATTCTTGCACTCGAAGGGCATGTTAAGCCGGTTCTTGCGATTGGTTTTTCACCTAACGGGTACCATTTAGCCACAGGTGGTGAAGACAACACTTGCCGCATTTGGGATTTGAGGAAGAAAAAGTCCTTATACACCATTCCTGCTCACTCTAATCTAATATCACAGCTTAAATTTGAGCCGCAAGAGGGTTACTATTTGGTAACTGCCTCATATGACATGACAGCGAAGGTTTGGTCGGCCCGCGATTTTAAGCCTGTGAAGACATTATCTGGGCATGAATCAAAAGTTACATCCTTGGATGTTCGTGGAGATGGTGGATATATCGTAACTGTATCACATGATCGCACCATAAAGCTGTGGTCCAGCAACATGGCTAATGATCAACAAAACATGGATGTTGAGTAA 1587 0.4657 MEEEKENSTSTTPPRSVIPPSIVPPLAPIPPVRPPMLQNSEVGPSDSDSDHNELGTGINKGAGEYEISEESRQVRERQEKARQELMLKRRAAALAVPTNDMAVRARLRRLGEPITLFGEREMERRDRLRMIMAKLDAEGQLEKLMKAHEEEEAAASISRDMAEEELEYPFYTEGSHSLQNARIDIAKYSLARAASRLQRAKRKRDDPDEDVDEEINWAFNPAGNFSLEFSEVGDDRPLSGCSFSPDGTQLATCSLTGSAKLWTMPDIRKVSTLKGHTERATDVAYSPVHNHVATASADRTARYWNDQGTLLRTFEGHLDRLARIAFHPSGKYLGTTSFDKTWRLWDVETGEELLLQEGHSRSVYGLAFHHDGSLAASCGLDSLARVWDLRTGRSILALEGHVKPVLAIGFSPNGYHLATGGEDNTCRIWDLRKKKSLYTIPAHSNLISQLKFEPQEGYYLVTASYDMTAKVWSARDFKPVKTLSGHESKVTSLDVRGDGGYIVTVSHDRTIKLWSSNMANDQQNMDVE 528
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc272100g00009 528 FunFam U4/U6 small nuclear ribonucleoprotein PRP4-like protein 358 526 - -
Stsc272100g00009 528 CDD WD40 237 515 - -
Stsc272100g00009 528 SMART pr04_2 98 151 IPR014906 -
Stsc272100g00009 528 Coils Coil 134 167 - -
Stsc272100g00009 528 ProSiteProfiles Trp-Asp (WD) repeats profile. 273 305 IPR001680 GO:0005515
Stsc272100g00009 528 Pfam pre-mRNA processing factor 4 (PRP4) like 103 129 IPR014906 -
Stsc272100g00009 528 PANTHER WD40 REPEAT PROTEIN 49 516 - -
Stsc272100g00009 528 Gene3D - 214 396 IPR015943 GO:0005515
Stsc272100g00009 528 PRINTS G protein beta WD-40 repeat signature 502 516 IPR020472 -
Stsc272100g00009 528 PRINTS G protein beta WD-40 repeat signature 417 431 IPR020472 -
Stsc272100g00009 528 PRINTS G protein beta WD-40 repeat signature 460 474 IPR020472 -
Stsc272100g00009 528 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 356 393 - -
Stsc272100g00009 528 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 314 351 - -
Stsc272100g00009 528 Pfam WD domain, G-beta repeat 478 515 IPR001680 GO:0005515
Stsc272100g00009 528 Pfam WD domain, G-beta repeat 269 305 IPR001680 GO:0005515
Stsc272100g00009 528 Pfam WD domain, G-beta repeat 396 430 IPR001680 GO:0005515
Stsc272100g00009 528 Pfam WD domain, G-beta repeat 357 388 IPR001680 GO:0005515
Stsc272100g00009 528 Pfam WD domain, G-beta repeat 309 346 IPR001680 GO:0005515
Stsc272100g00009 528 ProSitePatterns Trp-Asp (WD) repeats signature. 375 389 IPR019775 -
Stsc272100g00009 528 MobiDBLite consensus disorder prediction 1 77 - -
Stsc272100g00009 528 ProSiteProfiles Trp-Asp (WD) repeats profile. 483 515 IPR001680 GO:0005515
Stsc272100g00009 528 ProSitePatterns Trp-Asp (WD) repeats signature. 417 431 IPR019775 -
Stsc272100g00009 528 SUPERFAMILY WD40 repeat-like 227 514 IPR036322 GO:0005515
Stsc272100g00009 528 Gene3D - 71 158 IPR036285 -
Stsc272100g00009 528 ProSiteProfiles Trp-Asp (WD) repeats profile. 356 397 IPR001680 GO:0005515
Stsc272100g00009 528 MobiDBLite consensus disorder prediction 40 54 - -
Stsc272100g00009 528 ProSiteProfiles Trp-Asp (WD) repeats profile. 440 482 IPR001680 GO:0005515
Stsc272100g00009 528 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 483 515 - -
Stsc272100g00009 528 ProSitePatterns Trp-Asp (WD) repeats signature. 333 347 IPR019775 -
Stsc272100g00009 528 ProSiteProfiles Trp-Asp (WD) repeats profile. 398 439 IPR001680 GO:0005515
Stsc272100g00009 528 MobiDBLite consensus disorder prediction 17 37 - -
Stsc272100g00009 528 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 440 473 - -
Stsc272100g00009 528 Gene3D - 397 526 IPR015943 GO:0005515
Stsc272100g00009 528 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 398 432 - -
Stsc272100g00009 528 ProSiteProfiles Trp-Asp (WD) repeats profile. 314 355 IPR001680 GO:0005515
Stsc272100g00009 528 SMART WD40_4 433 473 IPR001680 GO:0005515
Stsc272100g00009 528 SMART WD40_4 391 430 IPR001680 GO:0005515
Stsc272100g00009 528 SMART WD40_4 266 305 IPR001680 GO:0005515
Stsc272100g00009 528 SMART WD40_4 224 263 IPR001680 GO:0005515
Stsc272100g00009 528 SMART WD40_4 307 346 IPR001680 GO:0005515
Stsc272100g00009 528 SMART WD40_4 476 515 IPR001680 GO:0005515
Stsc272100g00009 528 SMART WD40_4 349 388 IPR001680 GO:0005515
Stsc272100g00009 528 SUPERFAMILY PRP4-like 82 136 IPR036285 -
Stsc272100g00009 528 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 273 305 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc272100g00009 Stsc-Chr272100 59295 62581 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc272100g00009 318 514 U-box Gene Family AT2G33340 23.077 1.92e-10 61.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc272100g00009 K12662 - gmx:100788948 813.913