Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc272100g00008 ATGGAAGAGGAGAAGGAAAATAGTACATCAACCACCCCGCCTCGATCAGTTATTCCCCCTTCTATTGTACCCCCTTTAGCTCCAATTCCTCCGGTCCGGCCACCCATGCTGCAAAACAGTGAGGTTGGGCCCAGTGACTCTGATTCAGATCACAATGAATTGGGCACTGGAATTAACAAGGGTGCAGGGGAGTATGAGATATCAGAAGAGAGTAGACAAGTAAGAGAGCGCCAAGAAAAGGCAAGGCAAGAACTCATGCTTAAGAGGCGTGCTGCTGCCCTTGCTGTTCCCACAAATGACATGGCTGTGCGAGCTCGTCTTCGCCGCCTTGGCGAGCCTATAACTCTCTTCGGTGAGAGGGAGATGGAGAGGAGAGACAGGTTGCGGATGATTATGGCAAAGCTGGATGCCGAAGGTCAGCTTGAGAAGCTGATGAAAGCTCATGAGGAGGAAGAGGCAGCAGCTTCTATTTCAAGGGATATGGCTGAAGAAGAACTAGAGTATCCTTTCTACACTGAAGGATCACATTCTCTTCAGAATGCCAGAATTGACATTGCTAAATATTCTTTAGCTAGAGCAGCATCACGTCTTCAACGTGCCAAGAGGAAAAGGGATGATCCGGATGAAGATGTGGATGAAGAGATTAACTGGGCATTCAACCCGGCTGGAAATTTCAGTCTTGAATTTAGTGAAGTCGGAGATGATCGACCACTTTCTGGTTGCTCCTTTTCTCCAGATGGAACACAGCTTGCTACCTGTTCCCTAACCGGATCAGCCAAGTTGTGGACCATGCCTGACATAAGAAAAGTTTCTACTTTGAAAGGCCACACAGAGCGTGCTACCGATGTTGCTTATTCTCCTGTGCATAATCATGTAGCAACTGCATCTGCTGACCGGACTGCAAGATATTGGAATGATCAGGGAACCCTATTGAGGACATTTGAAGGTCATCTTGACCGTCTTGCGCGCATTGCCTTCCATCCATCAGGGAAATACCTGGGTACTACTAGCTTTGATAAGACGTGGAGATTATGGGACGTCGAAACAGGCGAGGAGTTGCTTCTTCAAGAAGGTCATAGTAGAAGTGTATATGGTTTGGCTTTCCATCATGACGGATCATTAGCTGCATCTTGTGGACTGGATTCTCTAGCCCGTGTTTGGGATCTTAGAACCGGAAGAAGTATTCTTGCACTCGAAGGGCATGTTAAGCCGCCACAGGTGGTGAAGACAACACTTGCCGCATTTGGGATTTGA 1254 0.4777 MEEEKENSTSTTPPRSVIPPSIVPPLAPIPPVRPPMLQNSEVGPSDSDSDHNELGTGINKGAGEYEISEESRQVRERQEKARQELMLKRRAAALAVPTNDMAVRARLRRLGEPITLFGEREMERRDRLRMIMAKLDAEGQLEKLMKAHEEEEAAASISRDMAEEELEYPFYTEGSHSLQNARIDIAKYSLARAASRLQRAKRKRDDPDEDVDEEINWAFNPAGNFSLEFSEVGDDRPLSGCSFSPDGTQLATCSLTGSAKLWTMPDIRKVSTLKGHTERATDVAYSPVHNHVATASADRTARYWNDQGTLLRTFEGHLDRLARIAFHPSGKYLGTTSFDKTWRLWDVETGEELLLQEGHSRSVYGLAFHHDGSLAASCGLDSLARVWDLRTGRSILALEGHVKPPQVVKTTLAAFGI 417
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc272100g00008 417 PANTHER WD40 REPEAT PROTEIN 49 404 - -
Stsc272100g00008 417 SMART pr04_2 98 151 IPR014906 -
Stsc272100g00008 417 SUPERFAMILY PRP4-like 82 136 IPR036285 -
Stsc272100g00008 417 Coils Coil 134 167 - -
Stsc272100g00008 417 CDD WD40 232 401 - -
Stsc272100g00008 417 Gene3D - 210 324 IPR015943 GO:0005515
Stsc272100g00008 417 Pfam pre-mRNA processing factor 4 (PRP4) like 103 129 IPR014906 -
Stsc272100g00008 417 ProSiteProfiles Trp-Asp (WD) repeats profile. 273 305 IPR001680 GO:0005515
Stsc272100g00008 417 ProSitePatterns Trp-Asp (WD) repeats signature. 333 347 IPR019775 -
Stsc272100g00008 417 SUPERFAMILY WD40 repeat-like 227 407 IPR036322 GO:0005515
Stsc272100g00008 417 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 356 393 - -
Stsc272100g00008 417 MobiDBLite consensus disorder prediction 17 37 - -
Stsc272100g00008 417 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 314 351 - -
Stsc272100g00008 417 ProSitePatterns Trp-Asp (WD) repeats signature. 375 389 IPR019775 -
Stsc272100g00008 417 SMART WD40_4 266 305 IPR001680 GO:0005515
Stsc272100g00008 417 SMART WD40_4 224 263 IPR001680 GO:0005515
Stsc272100g00008 417 SMART WD40_4 307 346 IPR001680 GO:0005515
Stsc272100g00008 417 SMART WD40_4 349 388 IPR001680 GO:0005515
Stsc272100g00008 417 Pfam WD domain, G-beta repeat 269 305 IPR001680 GO:0005515
Stsc272100g00008 417 Pfam WD domain, G-beta repeat 357 388 IPR001680 GO:0005515
Stsc272100g00008 417 Pfam WD domain, G-beta repeat 309 346 IPR001680 GO:0005515
Stsc272100g00008 417 Gene3D - 71 143 IPR036285 -
Stsc272100g00008 417 Gene3D - 325 413 IPR015943 GO:0005515
Stsc272100g00008 417 MobiDBLite consensus disorder prediction 1 77 - -
Stsc272100g00008 417 ProSiteProfiles Trp-Asp (WD) repeats profile. 314 355 IPR001680 GO:0005515
Stsc272100g00008 417 ProSiteProfiles Trp-Asp (WD) repeats profile. 356 397 IPR001680 GO:0005515
Stsc272100g00008 417 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 273 305 - -
Stsc272100g00008 417 MobiDBLite consensus disorder prediction 40 54 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc272100g00008 Stsc-Chr272100 59295 62581 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc272100g00008 250 401 U-box Gene Family AT2G33340 29.747 3.36e-18 84.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc272100g00008 K12662 - gmx:100788948 591.267