Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc272099g00002 ATGGTCGGGGTGTTAAAGCGTCTGAAACCCGTGCTCGATGATGTAATGGACTGCAAACTCCCGTTTCACCAAAATATGTCTAAAGAGTGTGAAGAATTGGATGTGCGGATTAACGAAGCTAGAGACTTCATCGAAAAATGGGGTCCAAAGATGAGCAAGATTCATAGTGTTATACAAAGCAGCACATTGTTGATTAAGTTGCAGAGCACGTCACTTGACATATGTCACATGATAGTTAGATCCCTACAGTCACCTCCGCCTGCTTCGGTTTTGGCTAATCTTCAGAACTATATCCAGGAACTTCAGTGTCTCAAGAAGGAAACAGCAATGGTTGATATAGAGGAAGCGCTGAGAAACCTAAGAGATAATGTTCAACCTTCCAATGAGCTTCTGAAGGAAATTGGCGAGTTACTAAAATTGACATCAAACGAGGAGCTCTTGAAAGAAAGTATTGCTGTGGAAAAGGGAAGGTTGAATGCTGAAGCCAATAAAATGAGAGGGGACTTGGATGAAATCAACGAAATTGTGAATCTTGTCCGCAATTTACGCGATTATGTAATGAAAACCGAGTCCCTTGAAGTCAAAACTGGTCTCTCGATCCCTCCATACTTCCGCTGCCCTTTATCATTGGAACTCATGATGGATCCTGTTATTGTGGCTTCGGGTCAAACATATGACAGGCAATCCATCCAAAAGTGGTTTGATAACGGTCTAAATGTTTGTCCCAAGACTCGTCAGAAACTCAGTCATATGAATCTTACTGCCAATTATACTGTCAAAGCTATGATTGCAAATTGGTGTCAGGAAAACAATGTCAAACTCCGTAGTAACTTGCAGCTTGATAAATCTGCTTGTAGCACAACCCCTGCAGATCATTCATTGCCTCAGGATTTAGCTAATAAATGTGGTTTCAAGTCCGTCTCGAGATCATCTCTTCTAAATGGACATGGAAATGAGAAGCAAAAGGGTGATAATTCTGTCAGATCAAGTGAAGATTATAATGGATGCCGGAGTGGAACAGTGGAAAAATGTGATCAACAGTCATCTGATGTACACAGCAGAAGTGAATCATTTTCAAGTTCAATATCCAGTAATGATTGCATACTTCCGGTTTCAGGACAGGCGTTGGGAATATCCAATAAGCCACAAAATGTGTCAGCATCGTTGGGAGAAATTAAAAATGTGCATTCTGGTAGCAAACAATCAGGGATTTCTTCTCCTCAGGTACCTGGAAATCAGTTTCAAAGTCCTGCATTAAGAATCCGAGGGATGGGAAATGGTAATGTTATTATGAATAATGATAGCATTAATAATAATGCTAATCAAAATGATTCAAGAGTTGATTCACATCCTGTTTTGAACTTGGGGGCAGGCGAAGTGGCCACTTCATCTCATGTTAATAAGTTGGTCGAAGAACTTCGCAGCCAATCAGTTGATGTGCAAACCATGGCTGCAGAGGAATTGAGGCTTCTTACAAAGAATGACGTGGAAAACCGTGTTATTGTGGGACAGTGTGGGGCTGTTGAGGCTCTACTTTTGCTTCTGTATTCGGATGTGAAGATAACACAAGAGCATGCTGTGACTGCTCTGTTAAATTTGTCAATCAATGACGACAACAAGACATTGATCATGGAAGCTGGAGCCATAGAACCTCTTATCCATGTTTTGAAGACGGGAAATGATGGCGCCAAGGCAAATTCTGCGGCAGCCCTGTTCAGCCTCTCTGTAATAGAAAACAACAAAGAAAAAATTGGCCGATCCAGCGCAGTTAAAGCCTTGGTGGAACTTCTTGCCTCAGGAACTCTTAGAGGGAAAAAGGATGCTGCTACGGCTTTATTTAACTTGTCAATATTTCATGATAACAAAGCTCGCATTGTTCAAGCCGGAGCTGTTAAATTTCTGGTTCGGATGATGGACTCTGCTGATGGAATGGTTGACAAGGCCGTTGCGCTTCTGTCAAACCTGTCAACAATTGCAGAGGGCCGGATAGAAATCGCAAGAGAAGGGGGCATCCCCTTACTAGTTGAAATTGTTGAAACAGGTTCTCTTAGGGGAAAGGAAAATGCGGCTTCGGTTCTGTTACAGTTATGCCTTCATAGTACCAAGTTTTGTACTCTTGTTTTGCAAGAAGGAGCTGTACCTCCCCTAGTTGCCTTATCTCAGTCCGGTACGCCAAGAGCGAAGGAAAAGGCACAACAGCTTCTCAGTCATTTTCGCAATCAGCGCGAAGGAGCTTCCGCGAAGGGAAAATCATGA 2256 0.4251 MVGVLKRLKPVLDDVMDCKLPFHQNMSKECEELDVRINEARDFIEKWGPKMSKIHSVIQSSTLLIKLQSTSLDICHMIVRSLQSPPPASVLANLQNYIQELQCLKKETAMVDIEEALRNLRDNVQPSNELLKEIGELLKLTSNEELLKESIAVEKGRLNAEANKMRGDLDEINEIVNLVRNLRDYVMKTESLEVKTGLSIPPYFRCPLSLELMMDPVIVASGQTYDRQSIQKWFDNGLNVCPKTRQKLSHMNLTANYTVKAMIANWCQENNVKLRSNLQLDKSACSTTPADHSLPQDLANKCGFKSVSRSSLLNGHGNEKQKGDNSVRSSEDYNGCRSGTVEKCDQQSSDVHSRSESFSSSISSNDCILPVSGQALGISNKPQNVSASLGEIKNVHSGSKQSGISSPQVPGNQFQSPALRIRGMGNGNVIMNNDSINNNANQNDSRVDSHPVLNLGAGEVATSSHVNKLVEELRSQSVDVQTMAAEELRLLTKNDVENRVIVGQCGAVEALLLLLYSDVKITQEHAVTALLNLSINDDNKTLIMEAGAIEPLIHVLKTGNDGAKANSAAALFSLSVIENNKEKIGRSSAVKALVELLASGTLRGKKDAATALFNLSIFHDNKARIVQAGAVKFLVRMMDSADGMVDKAVALLSNLSTIAEGRIEIAREGGIPLLVEIVETGSLRGKENAASVLLQLCLHSTKFCTLVLQEGAVPPLVALSQSGTPRAKEKAQQLLSHFRNQREGASAKGKS 751
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc272099g00002 751 SUPERFAMILY RING/U-box 198 274 - -
Stsc272099g00002 751 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 506 548 IPR000225 GO:0005515
Stsc272099g00002 751 MobiDBLite consensus disorder prediction 328 362 - -
Stsc272099g00002 751 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 629 670 IPR000225 GO:0005515
Stsc272099g00002 751 SMART arm_5 658 698 IPR000225 GO:0005515
Stsc272099g00002 751 SMART arm_5 536 576 IPR000225 GO:0005515
Stsc272099g00002 751 SMART arm_5 577 617 IPR000225 GO:0005515
Stsc272099g00002 751 SMART arm_5 495 535 IPR000225 GO:0005515
Stsc272099g00002 751 SMART arm_5 618 657 IPR000225 GO:0005515
Stsc272099g00002 751 MobiDBLite consensus disorder prediction 313 362 - -
Stsc272099g00002 751 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 199 274 IPR013083 -
Stsc272099g00002 751 Pfam Armadillo/beta-catenin-like repeat 536 575 IPR000225 GO:0005515
Stsc272099g00002 751 Pfam Armadillo/beta-catenin-like repeat 580 616 IPR000225 GO:0005515
Stsc272099g00002 751 Pfam Armadillo/beta-catenin-like repeat 496 534 IPR000225 GO:0005515
Stsc272099g00002 751 Coils Coil 728 748 - -
Stsc272099g00002 751 ProSiteProfiles U-box domain profile. 199 273 IPR003613 GO:0004842|GO:0016567
Stsc272099g00002 751 Pfam U-box domain 200 271 IPR003613 GO:0004842|GO:0016567
Stsc272099g00002 751 Coils Coil 103 123 - -
Stsc272099g00002 751 Gene3D - 581 659 IPR011989 -
Stsc272099g00002 751 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 547 589 IPR000225 GO:0005515
Stsc272099g00002 751 Gene3D - 466 580 IPR011989 -
Stsc272099g00002 751 FunFam RING-type E3 ubiquitin transferase 199 273 - -
Stsc272099g00002 751 PANTHER U BOX DOMAIN-CONTAINING 6 739 - -
Stsc272099g00002 751 FunFam RING-type E3 ubiquitin transferase 450 744 - -
Stsc272099g00002 751 CDD RING-Ubox_PUB 201 250 IPR045210 -
Stsc272099g00002 751 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 588 630 IPR000225 GO:0005515
Stsc272099g00002 751 SUPERFAMILY ARM repeat 464 738 IPR016024 -
Stsc272099g00002 751 Gene3D - 660 741 IPR011989 -
Stsc272099g00002 751 SMART Ubox_2 203 266 IPR003613 GO:0004842|GO:0016567
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc272099g00002 Stsc-Chr272099 18297 22148 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc272099g00002 160 749 U-box Gene Family AT2G23140 44.562 1.40e-158 472
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc272099g00002 - - gmx:100800949 1018.45